Aluc003494.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- ham
- Assembly
- GCA_009739505.2
- Location
- CM019177.2:30160847-30167734[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00021 4.2 7.7 0.1 20 45 162 187 155 190 0.84 2 3 0.00017 3.3 8.0 0.4 21 45 191 215 187 220 0.89 3 3 1e-05 0.21 11.9 0.3 20 45 219 244 215 247 0.90
Sequence Information
- Coding Sequence
- ATGAGCCCCGCCTCCAGACCACAGGTCACAACGGAAGAAGATCAGCCGCTGGACCTGCGGGTGGAGCGGAAGAAAGTGGAGCTCGAAGACGAGAACCAAAACCTCATTCTCGGGCCGATGTCGCGCTCGCCGATGTCCGAGTACGCCTCGGACGACGGGCTCGACGGACCGGAGCGCCTGAACGGCTCCGACGAGCGGCACCCTAGCTCAGACGGGCGGCACCACCCGGTGTCGGAGGCGTCGCCGTCGCCACCTCCCTCCGGCCCTGGACCGCCACCGTCGTTCGTGTTCGGACCGGCCGGCACCCCTCTCCCCCTTCATCCGGCTGTGTTCGAGTCCATGTACCGCGATAAGCTGTACCCCCCATCCAACTTCATCAGCAGTTCGTATCCTTTCCTCAACCACTCGCGAGCGCCTCCGAGCTCCGCCAAGTCGTTGGTGGACACCGTTTCCGCCGTCCTGGGGACCCCCGCGGGGCATCTCAAGTCCAAGGACCGCTACGCCTGCAAGTTCTGTGGAAAAGTCTTCCCCAGATCGGCGAATCTGACCCGACACTTGCGAACCCACACAGGCGAGCAGCCCTACAAATGCAAATACTGCGACCGGTCATTTTCCATCTCGTCGAACCTCCAAAGGCACGTGCGGAACATTCACAACAAGGAGAGACCCTTCAAGTGTCCGACCTGTGAAAGGTGTTTCGGGCAGCAGACGAATCTGGACCGGCACTTGAAGAAGCACGATCCGGACGTCCACTCCTCCGACTCTTCTCCTCCCAACGGCCCGAGGTACATAAAAGAAGAGGCGTCGTACTTTGAAGAAATCCGGTCTTTCATGGGCAAGGTGACTTCAAGGGCGCCATCTGTGTCGCCGAGTGGCGCCAGCTAA
- Protein Sequence
- MSPASRPQVTTEEDQPLDLRVERKKVELEDENQNLILGPMSRSPMSEYASDDGLDGPERLNGSDERHPSSDGRHHPVSEASPSPPPSGPGPPPSFVFGPAGTPLPLHPAVFESMYRDKLYPPSNFISSSYPFLNHSRAPPSSAKSLVDTVSAVLGTPAGHLKSKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCDRSFSISSNLQRHVRNIHNKERPFKCPTCERCFGQQTNLDRHLKKHDPDVHSSDSSPPNGPRYIKEEASYFEEIRSFMGKVTSRAPSVSPSGAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00145923;
- 90% Identity
- iTF_00145923;
- 80% Identity
- iTF_00145923;