Aluc007233.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- znf711
- Assembly
- GCA_009739505.2
- Location
- CM019168.2:10030364-10116063[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 7.8 6.5e+02 1.3 0.2 6 23 247 266 244 266 0.85 2 17 1.6 1.3e+02 3.5 1.8 1 21 365 385 365 389 0.89 3 17 0.00021 0.017 15.7 0.6 2 22 446 466 445 469 0.89 4 17 1.8 1.5e+02 3.3 4.1 2 19 485 502 484 507 0.90 5 17 0.0012 0.098 13.3 0.7 1 23 512 536 512 536 0.90 6 17 3.5 2.9e+02 2.4 2.5 2 21 546 565 546 568 0.77 7 17 0.0043 0.36 11.5 0.6 1 20 573 592 573 594 0.93 8 17 0.18 15 6.4 0.3 1 23 625 647 625 647 0.96 9 17 1.6e-05 0.0013 19.2 2.2 1 23 657 678 657 678 0.97 10 17 2.8e-06 0.00023 21.6 1.0 1 23 684 707 684 707 0.92 11 17 0.00061 0.051 14.2 0.1 3 23 720 741 718 741 0.95 12 17 6.2e-06 0.00052 20.5 0.6 1 23 748 770 748 770 0.99 13 17 0.84 69 4.3 0.3 1 23 775 799 775 799 0.84 14 17 0.0017 0.14 12.8 5.0 1 23 805 828 805 828 0.97 15 17 0.061 5 7.9 8.4 2 23 835 856 834 856 0.97 16 17 9.3e-05 0.0077 16.8 2.6 1 20 862 881 862 883 0.95 17 17 2.3 1.9e+02 2.9 0.4 1 23 893 918 893 918 0.94
Sequence Information
- Coding Sequence
- ATGAGTGATGAAGACGATGAAGATACTCATTTCTGCTTGAGGTGCAACACAACCATCACGGGGTTGGATGCTTACGTGGTTCACAGGAAATCAAGGTGCAATCAGACTCAAACTTCCGACAGATATGGCCCAGGACCTTCTGGACTTCAGGTGGGCACCTGCCACGATGATTCCCCCGTTTCAGAAACACCAAGGATTCCAGATTCGGAATTACTGCTCCATTCTCCATCCATACATCCTACGTTGACTCCTCCGACCCCGCACAAAGATGAACCACAAGCCGATGATTACTTCTTCTCATCTTTGTGTCTCCAAAGTAGCTCCAAGATGGGTGACCACCCCCAGGCATTGAAACCCCACGGTGTTCTGACTCGTAGTAAGATTATGGAAAGAAGCAACGTAAGAGAAGAAAAGTCATCATCGATTCTCCAAGGCGAAGAAGTCGAAGCACAGGAGGATAGTGAGTCGGAAGATTCCGACGATGGACGACATCCTCCACCGACAAGTGGCGGCAAGTGGTTACCAGGATTCCGACCCACTCAGAGAGCGACATCTATCTTGTGGAAATCAGCCATCACTCCTGAGCACAAGCCTGCAGAGACCGAAACAAGAACAGAGCCCCAGACCGCAGTAAGGCGCCCTTCAGCACCACCTCCTAGCCATACCAGAGGGAAGTGGGATTCCTCAGAAAGACCATGGGGTCCCCTCAGAAAACCCAACGCTTACTGGTGTGGACCTTGCAATCGTCGACTCAGCTCCAGAATTGTTTATGAAAGGCATATCAAAAGCGAGCTTCATTTCAAAAGAACTAACCCTTGGAGAACACAAGTGGTTCTTGGAAAGAGAGCCCGGAGAAGAACGCAAATAGCTGAAGAATCTTCCTTGCGAATGCTGAATCGGAAACTTCCAAGAGAGGTCAAAAGCGCAAAGAGACGCCGAGGAGCGACGGTCTGCGATGTCTGTAATTACAGAGTCGCACCGCATCTTATGGGGAAACACCTCATATCCCACTACCACTGCAACCACCCGCGAAATGACAAGAACAACGAGATGGTACTCAAGCACATGCTGAGCATCGTCCACCAGGCTCCGTTTCAATGCGGTCTGTGCAAGTTTTATTGCAACACTCAGCAGGCATTTTTGAGCCACTGGGCCTCTGAAATGCACAGGCAGAACGACTTGAAGAGATCAGGCGTGTACTGGTGTCCCAATTGCAACTTCGAAGCAGATTCCAGTGTTGATATGAGTTGCCATCTTGTTGACGACTTGCACAGAGACCGTGTGATGATAGTCAATCATTCTGTACCCATCATCATCCAGAAAATAACTCCTCTTCAGTGTGAAGTGTGTGGCAAATGTTTCCGCTACAATGTACAGGTCCGCGCGCACAGCAAAATATGGGGTCATAAACAGACGAGAAGCACTGCATCCAACAGTTACCAAGAGGCCTTGATTTGTTCGGAGTGTCCTTACAAATGCAACTCGTTGGTCTCATTCCAGCGACACTGTTACATGAAGCACAAAAAAGTGCCTTACTTCTGCCGAAGATGCGGATTGAGTTTCAAGAGCTCGGCTGAAGTGAAAGCGCATCGAAAATCCTCTGCTCATCGCGATGCTGCAGGCCCGAAGGCAAGACAGTGTCCTCATTGCCAAATGTCATTCCTCAAGATATCTTCTTTGAAATGTCACTTGGAAGAACTTCACCCTGATTTGAAGCATAGGTGCCTGAAGTGTGGCGAAAGGTTCACTCTGAAACAGCAACTCTCTCAACATGCGATTTCTTGTCAAATGGTAACCAAAAGCGATCCAGGAAATGTCGACGATTCTGAGACGGCTGTATGTTTGGACGAACTCAATCCACagGAGAAAGACTTCAGCTGCGATAGATGCCAGTTCATTGGGAAAACAGAATCGGAGCTTTTAGTTCACAAATTGCTCCATGATAATGCGGAATCAAAGACTGGGAAATTTGAATGCCCGTACTGCAACAAGACTTTCAGTGACTCGTACATGAAAAAACACATGATGACTCATACATCTGAGCGACCATACACTTGCAAAATTTGCAATTTCAGTTTCAGCCGCCAAGACACTTTGAACCGACACGTGGTCAACATTCACCACGTGGAAACGAGCAGGTTGGAACTGAAACTGGATTGTGGATTGTGTGACAAACAGTTTTCTTCGCCGATTGCATTGGACCGCCACGTGAAATCCACGCACCAGAACAGGAAAAGGTCGTTCCAATGTTCCGAATGTGATCAAGCTTTCTACGAAAAGGGTACTTTGGATCGTCATATGCAAACTCATTTCGGGAAGAAATTTCACTGTCCAGAGGAAGGTTGCATTTTCAACGCGAGATCTCAGGGAGAACTGAAAATCCACGCTAGAACGCACTCGGAATCCAGAGAATTCCACTGCCAGCAATGTTCGTATTCTTCCAAGACCAAGAATCAACTTTCCAAGCATATGAAGTCAGTTCACATGCCCAAAGGCAAGCTAAAGTGCCCGAGGTGTCACTTCACTTGTCAGACCGGCACTCATCTCAAACGGCACTTGAGGATGCATTCTGGCTCGAAACCCTATCAGTGCCCTCACTGCTCTTTCACCTGCACTTCACTGGACAATCTTCGAAAGCATATTATTTATTCGAAAATTCATCCTGGAAAAACAGTCTACGAGTGTCAAACGGACGGCTGTTCCTTTGCGACCAACTTATCGAAGGATTTCAAAAGTCATCTGGTCAGGGAACACCAGGTGCTGATGAAAGACGCCATGGCTCACGTGGCCGGCATTTACAAACCCAATGTTGACACTTTCCAGGGAGATGGCAAAATCCACGAAACGAGGGAGGGAGATCACGACGAAGATGTAAACCAGACTGACGGAGTGGAggcagaagaagaggaagagacGACACTGCAGGAGTACGTCTACAGCACTGACGTGGTAGAAGCCGACGCCCGACTCCCAACTCTGGCGTCTGTCGCTCTGACGCCCGCAAAAACCGACGAAGACATCATTTTCATCCACATCGGCGGCCCTGAAGAGCAGCCTTTCGACCCTCACATGTTCCATCAAAGCTTCCCGATCATTGAGACTTTTCCGGGTCAACTGATGAATGATAATGTGGAAATTGAAACAACCCATGAAGACACCCCCTAA
- Protein Sequence
- MSDEDDEDTHFCLRCNTTITGLDAYVVHRKSRCNQTQTSDRYGPGPSGLQVGTCHDDSPVSETPRIPDSELLLHSPSIHPTLTPPTPHKDEPQADDYFFSSLCLQSSSKMGDHPQALKPHGVLTRSKIMERSNVREEKSSSILQGEEVEAQEDSESEDSDDGRHPPPTSGGKWLPGFRPTQRATSILWKSAITPEHKPAETETRTEPQTAVRRPSAPPPSHTRGKWDSSERPWGPLRKPNAYWCGPCNRRLSSRIVYERHIKSELHFKRTNPWRTQVVLGKRARRRTQIAEESSLRMLNRKLPREVKSAKRRRGATVCDVCNYRVAPHLMGKHLISHYHCNHPRNDKNNEMVLKHMLSIVHQAPFQCGLCKFYCNTQQAFLSHWASEMHRQNDLKRSGVYWCPNCNFEADSSVDMSCHLVDDLHRDRVMIVNHSVPIIIQKITPLQCEVCGKCFRYNVQVRAHSKIWGHKQTRSTASNSYQEALICSECPYKCNSLVSFQRHCYMKHKKVPYFCRRCGLSFKSSAEVKAHRKSSAHRDAAGPKARQCPHCQMSFLKISSLKCHLEELHPDLKHRCLKCGERFTLKQQLSQHAISCQMVTKSDPGNVDDSETAVCLDELNPQEKDFSCDRCQFIGKTESELLVHKLLHDNAESKTGKFECPYCNKTFSDSYMKKHMMTHTSERPYTCKICNFSFSRQDTLNRHVVNIHHVETSRLELKLDCGLCDKQFSSPIALDRHVKSTHQNRKRSFQCSECDQAFYEKGTLDRHMQTHFGKKFHCPEEGCIFNARSQGELKIHARTHSESREFHCQQCSYSSKTKNQLSKHMKSVHMPKGKLKCPRCHFTCQTGTHLKRHLRMHSGSKPYQCPHCSFTCTSLDNLRKHIIYSKIHPGKTVYECQTDGCSFATNLSKDFKSHLVREHQVLMKDAMAHVAGIYKPNVDTFQGDGKIHETREGDHDEDVNQTDGVEAEEEEETTLQEYVYSTDVVEADARLPTLASVALTPAKTDEDIIFIHIGGPEEQPFDPHMFHQSFPIIETFPGQLMNDNVEIETTHEDTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00930732;
- 90% Identity
- -
- 80% Identity
- -