Basic Information

Insect: Apolygus lucorum
Gene Symbol: -
Assembly: GCA_009739505.2
Location: CM019173.2:32314131-32395432[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.8 2.3e+02 2.7 0.0 5 16 27 38 25 39 0.88

2 14 4.3e-06 0.00035 21.0 1.2 1 23 82 104 82 104 0.98

3 14 1.7e-05 0.0014 19.1 5.9 1 23 173 195 173 195 0.97

4 14 1.6e-05 0.0013 19.2 2.8 1 23 199 221 199 221 0.97

5 14 5.3e-05 0.0044 17.5 7.4 1 23 227 249 227 249 0.98

6 14 0.0027 0.22 12.2 3.6 1 23 255 277 255 277 0.96

7 14 1e-06 8.4e-05 22.9 2.1 1 23 283 305 283 305 0.98

8 14 2.4e-07 2e-05 24.9 1.9 2 23 312 333 311 333 0.97

9 14 9.1e-08 7.5e-06 26.2 1.5 2 23 340 361 339 361 0.97

10 14 9e-08 7.4e-06 26.2 0.3 2 23 368 389 367 389 0.96

11 14 3.2e-07 2.6e-05 24.5 0.3 2 23 396 417 395 417 0.97

12 14 3.1e-07 2.5e-05 24.6 0.5 2 23 424 445 423 445 0.96

13 14 4.2e-07 3.4e-05 24.1 0.2 2 23 452 473 451 473 0.96

14 14 1.5e-07 1.3e-05 25.5 2.6 2 23 480 501 479 501 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.8	2.3e+02	2.7	0.0	5	16	27	38	25	39	0.88
2	14	4.3e-06	0.00035	21.0	1.2	1	23	82	104	82	104	0.98
3	14	1.7e-05	0.0014	19.1	5.9	1	23	173	195	173	195	0.97
4	14	1.6e-05	0.0013	19.2	2.8	1	23	199	221	199	221	0.97
5	14	5.3e-05	0.0044	17.5	7.4	1	23	227	249	227	249	0.98
6	14	0.0027	0.22	12.2	3.6	1	23	255	277	255	277	0.96
7	14	1e-06	8.4e-05	22.9	2.1	1	23	283	305	283	305	0.98
8	14	2.4e-07	2e-05	24.9	1.9	2	23	312	333	311	333	0.97
9	14	9.1e-08	7.5e-06	26.2	1.5	2	23	340	361	339	361	0.97
10	14	9e-08	7.4e-06	26.2	0.3	2	23	368	389	367	389	0.96
11	14	3.2e-07	2.6e-05	24.5	0.3	2	23	396	417	395	417	0.97
12	14	3.1e-07	2.5e-05	24.6	0.5	2	23	424	445	423	445	0.96
13	14	4.2e-07	3.4e-05	24.1	0.2	2	23	452	473	451	473	0.96
14	14	1.5e-07	1.3e-05	25.5	2.6	2	23	480	501	479	501	0.97

Sequence Information

Coding Sequence: ATGGAAAATCCTATAGCTCATCAAACGGGGGAGAGGAAAGAAGGTGACGATGTCTCAAAGATACGGCCCGCGACTAGCTATTGCGGTACTGATTTCACTCAACCTGCTGCTCTGATTGGCGTGGGCACTATGGGCGACGTGAAGGCAGAACTCACAACAGCCCATGCTCTCAAAGTCAGCATGACGCCAGAAGAGCTGAATTCCATCTTCTGCCACGAAGTTTTCGGCTCCCTGAAAGGCGGACATCAGTGCACTGTTTGCGGCAGGGTGTTCCCTTACCGGTATCAACTAATGGTCCACGCCCGATACCACACGCTCCCCGAAGAAAATGGCGGAGGTATCGTAGAAGGTGATGTCGTAGCAGCCGCCGCCGCAGTTGCCAAGGAATGGAACGGTCACGCTCTCGTCGAAGCTCTCCCACAAGCAGCCATTGCCGGAACAGCCACAGCAGTCGTGGCAGCGGCTCCAGCTCCCGCCCCAACGCCCACAGCTACTACTGCAAACGGTCAAAATCCACATGAGTGCCATTTGTGCCCGAAGAAGTTCTCACGGAAGGATCATCTAGACTCCCATTTGAGGGCTCACGAAGCGGACTTCAAATGCCACGTTTGCATGAAAGTGTTCAGTCGAAAAGAACACCTCATCGCTCACGTGCAGTGGCACACCGGATCCTCCCCGCACAGGTGTCATCTGTGTCGGAAAACCTTCACCAGGCGGGAGCATCTGGTAGCGCACGTCCGTCAACACACTGGTGAATCTCCGCACGTTTGCCGTTTCTGCGCCAAGTCCTTCACGAGGAGAGAACACGTCATCAACCACGAGCGCGGGCATACAGGTGAGACGCCGTTCAAGTGTAACCTCTGCCCCAAAGCTTTCGCCAGGCGCGACCACCTGGTCAACCATACTCGTCAACATACAGGGGAAACGCCATGGAGTTGCCTCGAGTGCGGGAAGGCGTTCAGGAGGAAGGAACATCTCACCATTCACACTCGGACTCACACAGGGGAAACACCATGGAGTTGCAACGAGTGCGGGAAGGCGTTCAGAAGGAAGGAACATCTCACCATTCACACTCGGATACACACAGGCGAGACACCATGGAGCTGCACTGAGTGTGGAAAAGCTTTCAGAAGAAAGGAAAACCTCACCATACACGCCCGAATCCACACAGGGGAGACGCCATGGAGTTGCACCGAGTGTGGAAAGGCGTTCAGGAGGAAAGAAACCCTCATCATTCATACTCGGATTCATACAGGAGAGACTCCATGGAGTTGCGGTGAATGCGGAAAGGCCTTTAGGAGGAAGGAACACCTGACTATCCATGCTCGAATTCATACTGGGGAGACCCCTTGGAGTTGCAACGTTTGTGGGAAGGCGTTCAAAAGGAAGGAAACCCTCACCATACATGCACGGATTCACACAGGAGAGACCCCCTGGCGGTGCGGAGAGTGCGGGAAAGCCTTCAGACGAAAGGAGCACCTCACGAAGCACAGTCGAACCCACACAGGTGAACCTCGTCCCCATAAAAAGTCCTGGAAAAATCAACAACagcagcaacaacaacaacaacaacagcagcAGCAACAACAACATCAGAACCAAAACCTGAGTGGAGTGACGATTGGATCGGGCATCCCTCCGGCATTCCCTGGAACTCGACCGCCTCTCCAAAGGCCTCTGACGGTGTCGACAGGAACGAACACGTCTCCTCCCGCTCCTCCATTACCGCCTCCAGCACCGCTCCACATCCCTCAGCACCACCAAAATCTGGATCTCTTCCCTGGCGTGGGACCCCCGTCTCACAACCATCCTCCACCACCCACGCACCATCTGTTCCCTCCTCCACCGCACGATCAGTATCGCTGGCTCAAAGGTCACTTGATGTAA
Protein Sequence: MENPIAHQTGERKEGDDVSKIRPATSYCGTDFTQPAALIGVGTMGDVKAELTTAHALKVSMTPEELNSIFCHEVFGSLKGGHQCTVCGRVFPYRYQLMVHARYHTLPEENGGGIVEGDVVAAAAAVAKEWNGHALVEALPQAAIAGTATAVVAAAPAPAPTPTATTANGQNPHECHLCPKKFSRKDHLDSHLRAHEADFKCHVCMKVFSRKEHLIAHVQWHTGSSPHRCHLCRKTFTRREHLVAHVRQHTGESPHVCRFCAKSFTRREHVINHERGHTGETPFKCNLCPKAFARRDHLVNHTRQHTGETPWSCLECGKAFRRKEHLTIHTRTHTGETPWSCNECGKAFRRKEHLTIHTRIHTGETPWSCTECGKAFRRKENLTIHARIHTGETPWSCTECGKAFRRKETLIIHTRIHTGETPWSCGECGKAFRRKEHLTIHARIHTGETPWSCNVCGKAFKRKETLTIHARIHTGETPWRCGECGKAFRRKEHLTKHSRTHTGEPRPHKKSWKNQQQQQQQQQQQQQQQQHQNQNLSGVTIGSGIPPAFPGTRPPLQRPLTVSTGTNTSPPAPPLPPPAPLHIPQHHQNLDLFPGVGPPSHNHPPPPTHHLFPPPPHDQYRWLKGHLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01365766;
90% Identity: iTF_00145818;
80% Identity: iTF_00145818;