Amor034713.1
Basic Information
- Insect
- Apodemia mormo
- Gene Symbol
- -
- Assembly
- GCA_036924255.1
- Location
- JAUPFN010000028.1:446815-447687[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 1.8 2.9e+04 -3.3 0.0 27 35 8 16 3 26 0.70 2 7 0.00069 11 7.6 0.1 22 52 37 67 28 69 0.88 3 7 0.0007 11 7.6 0.1 21 54 92 125 87 125 0.89 4 7 0.0028 45 5.7 0.0 24 43 123 142 120 147 0.92 5 7 0.0099 1.6e+02 3.9 0.0 21 47 203 229 198 236 0.84 6 7 0.076 1.2e+03 1.1 0.0 26 44 236 254 231 258 0.87 7 7 8.7e-05 1.4 10.5 0.1 21 44 259 282 255 287 0.91
Sequence Information
- Coding Sequence
- ATGAATGAAGAGACCGACATGGCACCTGTAGAGTATTGTGTCATAACCATAGAGAAATCTGAAACAAAAACACTTGAAAATAATCCAGTTAAAGAAAAAGTGCCCTTAGAAAAACCGTTTTCTTGTGATATTTGTGGAAGAAAGTACAGTCAGAACAAAATTCTAAAACGACATAAGAATACTCACAATAATATAAAACCTCATATTTGTACAACCTGTGGGAAGGGTTTTACACAATTATCAATTTTGCTACAGCATAACCGGATACACACGGGAGAGAAGCCGTACACATGTGACATTTGTAAGAAATCATTCAGTCGTAAAGATAGTTTAAACGATCATAAGAAAATTCATAACTTTTTAAGGCCGCATGTTTGTGGTGTCTGTGATAAAAATTTCAAATCTTCGAGAGGATTACGTCAACATAAAGCCACACATACCGGAAGAGCATTAACGTGTGATGACTGTGGAAAGATTTTTAAAGACAAAGGTAGTTTAATAGTGCATAAAACCGTTCACGACACTATCAAACCATTTCCATGTGATTTGTGCGAGAAAAGTTTTAAACGTTTAAACATTTTACAAGAACACAAATTAACTCATACCGGTGAGAAGCCGTTTACTTGTAACACTTGTGGAAAAGCATTTAGTCAAAAGGGGAGTTACAACAGACACAAAAACATAcatgaaaatacaaaatcttaTGTGTGTAACCTCTGCGGTAAGGGGTTTAAATCTTCGAGTAACTTAAAACAACATACAGCTATTCATAATGGAGAAAAACCGTTCAGTTGTGATGTGTGTAAGAAATCGTTTAGACATAAACGTAATTTACACGAGCATATTAGCGCTCATTGTATGATGGTTAGCTAG
- Protein Sequence
- MNEETDMAPVEYCVITIEKSETKTLENNPVKEKVPLEKPFSCDICGRKYSQNKILKRHKNTHNNIKPHICTTCGKGFTQLSILLQHNRIHTGEKPYTCDICKKSFSRKDSLNDHKKIHNFLRPHVCGVCDKNFKSSRGLRQHKATHTGRALTCDDCGKIFKDKGSLIVHKTVHDTIKPFPCDLCEKSFKRLNILQEHKLTHTGEKPFTCNTCGKAFSQKGSYNRHKNIHENTKSYVCNLCGKGFKSSSNLKQHTAIHNGEKPFSCDVCKKSFRHKRNLHEHISAHCMMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00144888;
- 90% Identity
- iTF_00144888;
- 80% Identity
- iTF_00144888;