Amor035010.1
Basic Information
- Insect
- Apodemia mormo
- Gene Symbol
- -
- Assembly
- GCA_036924255.1
- Location
- JAUPFN010000028.1:6688558-6703237[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0051 82 4.8 0.0 21 52 268 299 263 301 0.87 2 7 0.00025 4 9.0 0.1 23 48 298 322 294 327 0.88 3 7 0.028 4.5e+02 2.5 0.0 21 47 324 350 321 355 0.89 4 7 0.022 3.6e+02 2.8 0.1 26 48 357 378 352 380 0.89 5 7 0.0061 99 4.6 0.0 21 52 380 411 378 413 0.91 6 7 0.00025 4.1 9.0 0.1 23 48 410 434 407 436 0.89 7 7 0.001 17 7.1 0.0 21 47 436 462 434 467 0.90
Sequence Information
- Coding Sequence
- ATGTCCACGGAAATTAAAATAGAGCAAGATGCGGATTGTTATTCTTTTCAATGCACTTCGGAAATTAAATTGGAAACGGATGTAATTAAAACAGACATGGATGAAAATAATGAATACGAAGATAATGTGGAGTCTACAGAAGTGAAATCTGAATTAGAAAATGTCGAAACTGGTCAGTTTAAGAGATTGCAAGAGGTAATAGAACAAGGCATTGATGAAGTGGTAGATGTGAACGATAAAATAGCATCTTTAAAAAATCCTGTCGTTGTACCAACGAGACTACAACAATCACAAATAAAAGTTAATGATATACTTGGATTTAAAAAAGATAAGAATCATGAGGATAGGTTTTCTAGATGTGACACTAGTAAATTACGTCGACATGAATTTTCACATATTGAAGAAAAATCAATTTCTTGTAAATTATGTGGAAAAATGTTTAgtcAGTTCAAGATATTGCACGAAATTAAGGAAGAAAGCATCGATGAAGTGGTAGATCTGAAAACTAAAATAACATCTTACAATAATACTGTCGTAGCAGCGAGACTCAGACAGCCACaaacaaaagtaaataaaaagtttgaACCTAAAAAGGACGAGAAAAATGACGATTTGTCGTACGGGTGTGGTGTTTGCGGGAAAGCTTTTAGTAAAAAGAAGATTTTAAATGAGCACGCTTTGTGCATTCACAGCGATATGAAGtcttttaaacaaaaagaaGTAAAGACGTACGTCTGTAATGTTTGCAATAAGGATTTATCAGATTTAGGTGATTTACGTTGCCATGAAATGACTCACACTGAGGAGAAGCCATTTACATGTGACGTCTGTAAAAAATCGTTCAGTCTGAAGGACAGTTTTAAGAAACATTTAaacatacacaataaaataaaaccttacatgtgtaatgtctgcaataAAAGTTTCTCAGAGTCAGGTAATTTACGTCGCCATGAATTAACTCACACTGGAGAGAAGCCATTTTCGTGTGACTTCTGTAAAAAAAAGTTCAATCTAAAGGTCAATTTAAAGACACATTTAAAcattcacaataaaataaaacgttaTATATGTAATGTCTGCAATAAAAGTTTTTCACAGTCAGGTAGTTTACATCGCCATGAGTTAACTCACACTGGAGAGAAGCCGTTTTCATGTGActtctgtaaaaaaacattcaatgaaaaggtcaaattaaaaaaacatttaaatatacataataaaataaaaccttatattTGTAATGTCTGCAATAAAAGTTTCTCAGAGTCAAGTAATTTACGTCGCCATGAATTAACTCACACTGGAGAGAAGCCATTTTCGTGTGACTTCTGTAAAAAAACGTTCAATCTAAAGGTCAATTTAAAGAGACATTTAAACattcacaataaaattaaagCCCTATATGTGGACATCCAAACAAGAAGGGTCCCCTAA
- Protein Sequence
- MSTEIKIEQDADCYSFQCTSEIKLETDVIKTDMDENNEYEDNVESTEVKSELENVETGQFKRLQEVIEQGIDEVVDVNDKIASLKNPVVVPTRLQQSQIKVNDILGFKKDKNHEDRFSRCDTSKLRRHEFSHIEEKSISCKLCGKMFSQFKILHEIKEESIDEVVDLKTKITSYNNTVVAARLRQPQTKVNKKFEPKKDEKNDDLSYGCGVCGKAFSKKKILNEHALCIHSDMKSFKQKEVKTYVCNVCNKDLSDLGDLRCHEMTHTEEKPFTCDVCKKSFSLKDSFKKHLNIHNKIKPYMCNVCNKSFSESGNLRRHELTHTGEKPFSCDFCKKKFNLKVNLKTHLNIHNKIKRYICNVCNKSFSQSGSLHRHELTHTGEKPFSCDFCKKTFNEKVKLKKHLNIHNKIKPYICNVCNKSFSESSNLRRHELTHTGEKPFSCDFCKKTFNLKVNLKRHLNIHNKIKALYVDIQTRRVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00144894;
- 90% Identity
- iTF_00144894;
- 80% Identity
- iTF_00144894;