Basic Information

Insect: Apocrypta bakeri
Gene Symbol: RREB1
Assembly: GCA_018906985.1
Location: JACCIA010000005.1:9476291-9482223[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.003 0.22 11.9 0.4 1 23 61 83 61 83 0.96

2 16 4.9e-05 0.0035 17.5 0.3 1 23 99 121 99 121 0.98

3 16 2.1e-07 1.5e-05 24.9 1.3 1 23 127 150 127 150 0.98

4 16 1.2 85 3.7 0.0 8 23 249 265 241 265 0.82

5 16 0.019 1.4 9.4 2.4 2 23 271 293 271 293 0.95

6 16 1.2 84 3.7 0.5 1 19 342 360 342 362 0.90

7 16 0.065 4.7 7.7 0.1 1 23 478 500 478 500 0.96

8 16 2.3e-05 0.0017 18.5 0.3 1 23 509 531 509 531 0.98

9 16 0.0011 0.082 13.2 2.8 1 23 537 560 537 560 0.97

10 16 0.001 0.073 13.4 2.6 1 23 946 969 946 969 0.97

11 16 0.00061 0.044 14.1 0.1 3 23 1253 1273 1251 1273 0.97

12 16 1.3 90 3.6 6.7 1 23 1279 1302 1279 1302 0.96

13 16 0.0077 0.56 10.6 2.3 1 23 1343 1367 1343 1367 0.97

14 16 2.9 2.1e+02 2.5 3.3 1 23 1509 1532 1509 1532 0.89

15 16 0.01 0.74 10.2 0.4 2 23 1584 1605 1583 1605 0.94

16 16 3 2.1e+02 2.5 5.6 1 21 1611 1631 1611 1632 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.003	0.22	11.9	0.4	1	23	61	83	61	83	0.96
2	16	4.9e-05	0.0035	17.5	0.3	1	23	99	121	99	121	0.98
3	16	2.1e-07	1.5e-05	24.9	1.3	1	23	127	150	127	150	0.98
4	16	1.2	85	3.7	0.0	8	23	249	265	241	265	0.82
5	16	0.019	1.4	9.4	2.4	2	23	271	293	271	293	0.95
6	16	1.2	84	3.7	0.5	1	19	342	360	342	362	0.90
7	16	0.065	4.7	7.7	0.1	1	23	478	500	478	500	0.96
8	16	2.3e-05	0.0017	18.5	0.3	1	23	509	531	509	531	0.98
9	16	0.0011	0.082	13.2	2.8	1	23	537	560	537	560	0.97
10	16	0.001	0.073	13.4	2.6	1	23	946	969	946	969	0.97
11	16	0.00061	0.044	14.1	0.1	3	23	1253	1273	1251	1273	0.97
12	16	1.3	90	3.6	6.7	1	23	1279	1302	1279	1302	0.96
13	16	0.0077	0.56	10.6	2.3	1	23	1343	1367	1343	1367	0.97
14	16	2.9	2.1e+02	2.5	3.3	1	23	1509	1532	1509	1532	0.89
15	16	0.01	0.74	10.2	0.4	2	23	1584	1605	1583	1605	0.94
16	16	3	2.1e+02	2.5	5.6	1	21	1611	1631	1611	1632	0.95

Sequence Information

Coding Sequence: ATGCTGGCTGCGGTGAGGCCTTTTTCGAATTTATCCCACATGACTGCCGAGACTGGACCCGATCATCGCGAAGGCGAGAGACAAACGGATGTTGCATCATCGGCACTGTACAACCTTTTGAATTTGAAGGTCGAAGCACAAGAGCAGCAAGTCCCAACGCAACAGTCAGGAGAAGGAAGCCACCCGTGTCCGGCCTGCCCACTGGTGCTATCGAGTTCGCGAGAGCTCACTCATCATCTGCGAGGTCACAACTCGCCCAGAAGTACAACCGACTGCAGCGGCGAGGAAATCGACTATTCTTGCGGCGTTTGCCACAAGGTGCTCAGCTCAGCCAGTTCCCTCGATCGACACATCCTCGTACATTCCGGCGAGCGACCTTTCAAGTGCAAGTATTGCGACATGGCTTTCACTACCAACGGCAATATGAACAGGCATCTCAGGACAGCTCACAGAACGGCTTCGCCGTCACACAGCTGTACCGACTCCGAGGCCAGCAGCGACTCCGAGAGGCCGCTTAAACGCAAACTCATTCAAGAAGAGTATAATAACAATGAGATCGCTAAGAGAAACTCGCCCGAGCTCCTCATCTCTCAAGGGAAGAAACGCTGTCCGGACTATGCCGATGAAGCCGACAGCCAGAGGAGACACAAAATTCTTCTGGGTAACGCCAGGAATGAGATCAGGGGTGGCTACTCTGACTCACCTCCCGCGACTCTCATACTCAGCTGTGCAGTGTGCGCTCGACAGGACTTCGGAACACCTGCGCAGCTGGAGGCTCACATGGAACGCAGCCATCCCGACGTGCAGCCCAAGTGCGAGAACTGCAGCGTTAGCTTCAAAAACCACCGCGCTTTGAACCTCCACAGATTCATGATTCATTACAATGAGGGCGCCAAACACCTGCGCAACTCCGTCGTTGGGTTCAACGACTTGACCTTCGTCGACTTCTCCTCCGACAAATTCCCGACCATCGCCAGAGCAGTTTGCGAACAGTCCCTACATCGACCGGCCTCCGGTGAAGCTTACCAGTGCTCCAAATGCCTCAGGGCTTTCCCCTGTCGATCGGCTCTCGATGCACACGAAAGCGACTGTGGCAGTCTCAGCCAGAACGTCGAACAGCACCGACTCCATGGAGATGATCAGTCTGGACGGGATGATTTCTTTGCCGGACTCGACCTTCAGAACAAGGCTGCCTTGGCGGAGGCCAAGGAGGGCAAGGACCTTGCCGATATTCAAAGCATCATCAGCGTGACTTCTGGACCGATACTTCAGAACCTCAACCGATCGGACGCCTGTACACCCGACAACTGCAAGATCAAACAGAGCTTCGGATCGTCTGGATCGTCCGGCACGCCCTGCTCCGAGTACCACGAGGAGGAAGCACAAGACGCGTTCGCAGCGGAGTTCCGCAAGATGAAAATGAAAGGCGAGTTTCCTTGCCGACTCTGTAGCGCAGTGTTCCCCAATCTTCGTGCTCTCAAAGGTCATAATAGAGCCCATATGGGTGTAGGCCCGGGTATGCCTTACCCCTGCAATATGTGCCCTTACAGCAGCACTGACAAGGCCACCCTAGTCAGGCATCTCAGGTCGCACAATGGCGACCGACCTTACGAGTGCTCGCTGTGTAATTATGCCTTCACCACCAAAGCCAATTGTGAGCGACACGTAAGAAACCGTCATGGCAAGCTCTCCCGCGAAGAAATCAAGAGCGTGCTCATCTACCATCCCAGCGAGGATTCCACCAACGATGGCAGCCTCGAGAGAGCTTCACCCAGAGGACCATCTCTCCTACGCGATGAAGTTCGGAAGACACTTGTCTACCCGAACGAACGAGAGGAACTGTCGGCTCACTACCCGCAAGCTGGAGAACTCAGGATCAAGGATGAGGCCAAGCTTAGACAGCCTGGAATGCCGGGACTCCACGCAATTGGCAACCACCACGAACTCTTCCCAAGACCATCACAACCTCTCGAACTGACTTACCGTAACGATGAGCAGCAGCAGTCACAACAGTCCAACATCGTGGTCAAAGAGGAAGACCTTGATTCAAGGTCATCGGACGGTAACGTGTCTCTAGTCAGCGAAACCAAAGCGGACTCCGCACACCAAAGAATCCAGGCTAATCCGATGGACCTGAAGAAGTTTAACAGCTTGTCCCAGTCCGAGGACGCACCTCTTGACCTTAGCATGGACGTGCTCGACCTCAGTCGCAAGGCTAAGGCCGCTGCTGCCGCAGCCGCCGCAGCCGCCGCAGCCATGAAAGCCGACGAAGTCAATGGAGCGAACGTAGACGATCAAAGATCACAAGAGGGTAGCCACAACAAAGACCTGTACAACACGACGAATCAGCTCCTGCTGACTCAGGCTCTGCTCAAGGCTGGTCAAACTCAGCAGCCCTCGTCGCTTGAGGCCTTCTACGCAAACGCTCAGATGCTGTACAGAAACTTTGGATCCTTCCCTGCTGCGGCTGCAGGTATCTTGCAGCCGTACCTCTTCAACCCACATCTTTTCGGACAGGACTACGCTATGAAAGACAGGATGCAGAAAGAACTGATCCGTGGACTCCAAACCAGCGGAGGCAGCCTTGTAGAACCACCTGCTCCAACCTACGGTTCTACTGCCTTCCCTCAACAGAGCAATCGTCAGCCAGATCAAAACAACTCTAGCTACGCTAATCTCATGTCCTCAAAGCTTATGAGTAAGAACTTGGCACCAGTCTCCAGGGATAAAAGCTTGGACAACAGCTCGCAGTCGTCCAACTCTGTTAAGATGGTTATCAAGAACGGTGTGCTCATGCCAAAACAGAAACAGCGTCGTTACAGGACCGAACGCCCGTTCACTTGCGCACACTGCTCAGCCAGGTTCACCTTGCGCAGCAACATGGAACGACACATCAAGCAACAGCATCCCCAGTTCTGGAGTCAAAGACCTAGAGGAGGACACTCAACCAGAGGCAGACCACCAGCGAATCCACCCACGCTTTTGCAGAACTTGGGACAATCTGGCTCGCATCATCACTCGCAGCATGGATCCTACGGTGGAATGCTGCCGAAATTAGGACAGCAATCAAATGCTGATTACGGCAAACACGCCATATCTGACCAAGTGAAGTACGCGATTTTAGCCCAGCAGCTGAAGGGTGGTAACAAAACCGAGGAAAACTCTGATGAGGAACTCGTCATCGACGAAGAGACGGAAAAGGAACACAGAGAGCCAACCGAGAGGACACTCAGTCTTCTCAGGGGAAAACTGGAGGCCAACATCGAAAATAAGGCCGGTGACGATGTAGATATGAGAGACATCAGGATCAAGGACGAATTCAAGGTGAAAATTAAACAGGAAATGGACAACAATCACATCGAACACAAGAACGACGAGCACGACGTACTCAACATTAAGGAGCCCGAAGAAGAGTTCGACGAAGATGACGATGAGGTCACCTCCATCGTACCCGAGGCCATGGTCAAGACCGAACTTCGCGATATGAAGGAGGACCAGGAGGATCTGGCTAGCGTATCCGAGATCCTGGATAATGCTTCTCAGCACTACCAACACTTCCAGTCCCAGTACATGAGCGACGAGGAGGGCCTTGTTGCCTCGACCAGCGACTGCAACCAGTCGGGTAGTGACGAGAAATCCGACTCAGTCAACTCTGCCAACTCGGCCCACTCGAACAGCTCGAAAAAGAAGAAGAAGAAGATGAAGAAGAAAAAGAAGAAGAAGTCGGCTTACTCCATGGCACCGAACCGAGTGATCTGTCCTTACTGCGAACGACCCTTCCCTTGGACCTCGTCTTTACGTCGACACATTCTTACGCACACCGGTCAGAAGCCCTTCCAGTGCATGCACTGCTCGCTTCTATTCACCACCAAGTCCAACTGTGACCGCCACTTACTGCGCAAGCATAAGAATAAGATCGAGAAGCTGCGTAGAGCTCGCAGCACCTCCTCACCAGAGCTCCAAGAGCCACCAAGCATCAACAACAACAGCAGTCAATTCGCAATGAGGAACGTTCCCGAGCGTCCTTACAAGTGTAACCAGTGTCCCAGTTCCACTTTCTCCACACTGGGCAATCTCAAGAAACACAAGTCGACGAAACACCAGTACTCGCAGCCTCATCTGGCACAAAAATCTGAACCCGAGTCACCTTGTAGCGAGTCTCAGCACAGTCCCCAAGACTGCAGTCCATCTCAGGACGAGAGCCATGCCCAAGAGGAATTCGTTCTCCCGAACCAGGACTGCAACATTCAGGAGTGCACTGAAACTCGGAACTGCGAAAAGCAACAAGAACAACATCAGCAACAAGGTACCGACCAAAGCGGTTACGAAAGTCAATCATCCGGTGTCTCGGACAACTTGCCTGAAAACCTAGCCGATCCTCTTGAGATTATGAGTTCAACGCCGATAGCTGACTCAACCAAGAACGGTAACAACGCAATCTCCAGAAAGAATTCGCCGACCTCGTCACCTGGTCCAAATAACAACAGCGCCAACAGCAGTTCTAACAACTCCGAAGCCGCTCCGTTCAAGTGTCATCTCTGCGACAGCGGCTTCTCCGAGAGGAACGACTGCCTCGAGCATATCAAGGACAACCATGAGCGCTCCTACGAGATGCTCGTTGCCAAGGGCGCTCTCGAAATGGACTTCGACGGAGCCGATGAACCCATGCCACCAGCGCCACCGGTTCCTCCCCAGAACCCTAGCGACGGCGAAGGCCGACGCTTCCCAGACTACAGCAACCGAAAGGTCGTCTGCGCTTTTTGCATGCGTCGTTTCTGGTCGGCAGAGGATCTCCGTCGCCACATGCGCACTCACACGGGAGAACGTCCCTTTTCCTGCGATATCTGCTGCCGTCGCTTCACTCTCAAGCACAGCATGCTTCGCCATCGCAAGAAGTGCGAGTCCTGCATCGACTCCAGCATGTACGTGGGTACCAGTGGCGACGAGGACACGGGCATGAGTCAACCTCCCACAATAACTCCTCGTTCGCAACAGCAGTCATCCCAAATTGCCCTGCAACAGCAGCGAGCCTCTCTGCCCCAGGTGGCAAGTGTCGCAACCGCCGATGCGGCACCGAGCAGTCTCATGCGTTTCAACCCTTACGATAAGCTTACCACCCTTACGGGCAAGCTGAGCGCTGGAGTCTCTTCGGCTGGCATGGATGTCAGCGACAACAATGACAACGATCTCATCTCCAACTTACTTGGCATCAGGGACAAGAGCATAATCGATCGAGTCCTCCAAGCTTCTGCCGACGATGCGGCTAAACTCTTGGGCGTCAAAGGAAACCACGAATGA
Protein Sequence: MLAAVRPFSNLSHMTAETGPDHREGERQTDVASSALYNLLNLKVEAQEQQVPTQQSGEGSHPCPACPLVLSSSRELTHHLRGHNSPRSTTDCSGEEIDYSCGVCHKVLSSASSLDRHILVHSGERPFKCKYCDMAFTTNGNMNRHLRTAHRTASPSHSCTDSEASSDSERPLKRKLIQEEYNNNEIAKRNSPELLISQGKKRCPDYADEADSQRRHKILLGNARNEIRGGYSDSPPATLILSCAVCARQDFGTPAQLEAHMERSHPDVQPKCENCSVSFKNHRALNLHRFMIHYNEGAKHLRNSVVGFNDLTFVDFSSDKFPTIARAVCEQSLHRPASGEAYQCSKCLRAFPCRSALDAHESDCGSLSQNVEQHRLHGDDQSGRDDFFAGLDLQNKAALAEAKEGKDLADIQSIISVTSGPILQNLNRSDACTPDNCKIKQSFGSSGSSGTPCSEYHEEEAQDAFAAEFRKMKMKGEFPCRLCSAVFPNLRALKGHNRAHMGVGPGMPYPCNMCPYSSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLSREEIKSVLIYHPSEDSTNDGSLERASPRGPSLLRDEVRKTLVYPNEREELSAHYPQAGELRIKDEAKLRQPGMPGLHAIGNHHELFPRPSQPLELTYRNDEQQQSQQSNIVVKEEDLDSRSSDGNVSLVSETKADSAHQRIQANPMDLKKFNSLSQSEDAPLDLSMDVLDLSRKAKAAAAAAAAAAAAMKADEVNGANVDDQRSQEGSHNKDLYNTTNQLLLTQALLKAGQTQQPSSLEAFYANAQMLYRNFGSFPAAAAGILQPYLFNPHLFGQDYAMKDRMQKELIRGLQTSGGSLVEPPAPTYGSTAFPQQSNRQPDQNNSSYANLMSSKLMSKNLAPVSRDKSLDNSSQSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCAHCSARFTLRSNMERHIKQQHPQFWSQRPRGGHSTRGRPPANPPTLLQNLGQSGSHHHSQHGSYGGMLPKLGQQSNADYGKHAISDQVKYAILAQQLKGGNKTEENSDEELVIDEETEKEHREPTERTLSLLRGKLEANIENKAGDDVDMRDIRIKDEFKVKIKQEMDNNHIEHKNDEHDVLNIKEPEEEFDEDDDEVTSIVPEAMVKTELRDMKEDQEDLASVSEILDNASQHYQHFQSQYMSDEEGLVASTSDCNQSGSDEKSDSVNSANSAHSNSSKKKKKKMKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPFQCMHCSLLFTTKSNCDRHLLRKHKNKIEKLRRARSTSSPELQEPPSINNNSSQFAMRNVPERPYKCNQCPSSTFSTLGNLKKHKSTKHQYSQPHLAQKSEPESPCSESQHSPQDCSPSQDESHAQEEFVLPNQDCNIQECTETRNCEKQQEQHQQQGTDQSGYESQSSGVSDNLPENLADPLEIMSSTPIADSTKNGNNAISRKNSPTSSPGPNNNSANSSSNNSEAAPFKCHLCDSGFSERNDCLEHIKDNHERSYEMLVAKGALEMDFDGADEPMPPAPPVPPQNPSDGEGRRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKCESCIDSSMYVGTSGDEDTGMSQPPTITPRSQQQSSQIALQQQRASLPQVASVATADAAPSSLMRFNPYDKLTTLTGKLSAGVSSAGMDVSDNNDNDLISNLLGIRDKSIIDRVLQASADDAAKLLGVKGNHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01037292;
90% Identity: -
80% Identity: -