Abak004490.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- ZFX
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000001.1:22034661-22039611[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.6 1.2e+02 3.3 0.1 3 23 25 45 24 45 0.94 2 15 0.15 10 6.6 0.4 1 23 934 957 934 957 0.91 3 15 0.00051 0.036 14.3 3.4 2 23 1042 1064 1041 1064 0.97 4 15 0.0017 0.12 12.6 0.2 2 23 1077 1098 1076 1098 0.97 5 15 1.7e-05 0.0012 18.9 2.3 2 23 1101 1122 1100 1122 0.97 6 15 0.021 1.5 9.2 0.4 1 23 1128 1150 1128 1150 0.95 7 15 2.4e-05 0.0017 18.5 4.5 2 23 1157 1178 1156 1179 0.95 8 15 0.11 7.7 7.0 3.7 5 23 1192 1210 1191 1210 0.97 9 15 2.2e-05 0.0016 18.6 1.5 3 23 1217 1238 1216 1238 0.97 10 15 0.0098 0.71 10.3 0.3 2 23 1254 1274 1253 1274 0.97 11 15 6.5e-05 0.0047 17.1 0.7 1 20 1280 1299 1280 1302 0.92 12 15 2.6e-05 0.0018 18.4 0.8 1 23 1310 1332 1310 1332 0.99 13 15 0.0023 0.16 12.3 3.2 1 23 1338 1360 1338 1360 0.97 14 15 2.3e-06 0.00017 21.7 3.9 1 23 1366 1388 1366 1388 0.99 15 15 0.00029 0.021 15.0 7.2 1 23 1394 1416 1394 1417 0.96
Sequence Information
- Coding Sequence
- ATGGATCTCAGCTCAGCCGTAAGTGCAATGTCGCCGGGAGGATCGAGCGGCGGAGGTGGTGGAGCAGTAGCCTGCCCGGTCTGCACACTCTATCTGCGCGAGGGTATTAGTCTGCAGAAGCATTTGGACACTCACCCAAAGGAGCAGCAACAGCAACCGCCATCCGCCTCGCCGTCACCACATGTTCCTCACGCGCAGTCGCCTTATCCGATTGGGCCAATCTTCGAATGCCCACCGATTAACGCCATGATACCGCCACCCCAATTCGCATCGTTCAGCTACCAGCAATTTGTTAATAATGGTACAATGATGATACCCGCACAGTACGCGATGGCCCAAGCACAGGCTTCTCCATCGAGTCAAATGATGCAGATGCTGTACAGCCCATACGGTATGTACCATCAACAACAGATTCCGACGGTTCAGATGATCTCGGCTCCACCAGCTATGATGCCAACTTCAACGACGACATTACCGACAACAGTGCCCGCAGTAACGACGCGCATGAGGCCGGCCACGAGTACGAGTAATATCACGATTACCGAAACCCCGACGTCAACGCCAATGCCGGTATCACCACCAAGGACGACAAGCTGTGTACAGCCTCAACAACAGTCCCAACCCGAGACGCAAACGCAGCAACTCGATGTCGAACAATCGTCTAAACAACAACCGACACAAATAATTCACGAGATTATACCAGGACCCGATCGCATATTACCCGATCTGGAAATGCCTCCGTCGCCGGAACCGACGCACGTCGAGCCCGAGCACGAAGAAGGTGATGATGAACATAGAGAACAACAGACTCGGAACACTTGTGCTGATCAGGAAGCACAGCCCAACGTTGATCAATATCAGAGCGAGAGTCCACCAATTTTAATCAGCAATTCCTGCGAAGACACTGCTGATGACGACAAGACTGAACGGATTCTACCGGATATTGAAGATAACGAAGAAATCGAATCGCTCATAGTTCGAACTGCAGAGAATAGAGTAGAAAGTGACAATGATGCCGAGAGGCAGGAATCGACATCTGTGGAACAGATGGAAATTGTGACGAATGAAGAAATTCCACAGAAAGATTCTGTGGAAAATATTGAATGTAGTGAAAAACTAGAGAGTTCTGGGGAGCTTGTGGATAAATCTAACGATGACAAAGTCATCTGTGAAATCACAGAGCCCCAAGATTTAACTACCGAAGAAAGTCGTATTAATAATGTTATTATTCATAAATCTGAAACTGATCAAATTGACCGAATGCTAGATAATATGGAATCTGAATTCAGCAACGTAGAATTAAACGCTAAAGGTGATGAAGAGGCACAAAACGAAAAACCTCAGGGAGAAATTCAAGATGCCTTATCGGAAGAACCTGTTGAAAAACATACTGAGGATGACGATAATACGAGCGTGTTGTACCATAAAAATAGTCCAGAACCGATTGAGTGCAAGATTATTCATGCTCACGAAGATACGGACGTGTCTTCGGTGATCTCATCGGATTCTATTCACTGCGACATGGAAATTCAGAATATTATTACGTCGGCCTATCATTATAAATGCTCGCAATCTCTACCAGCCTCGCCGATTATTAAAAAGCACTTTTACCGGTCGCTTTCTCGCGCCTCCCAACGTTCGGACTTTGATCAGTCGAATGAAAATCTTTGCCCATATCCAGTCGGCTTCGAAGCTACTTCCTTACAGGATTATCTTAAAACCAATTTTAATGACGAAGATATGGAACTCGAAGAGCCTGTGCCTCACTCATACTTGAAACAAAGTAGTGGGATTATTGCGGAACGTGCGAAATCTCATTCATCTCTTTCTGTAAACATGAGCGGCGTTTCTGTGCTGAAAGCGCGCCGTAGCAAAGTACCAACCTCGTCAGTTTCTACTCATTCTGGTTTCTCTTACGGACAGATGGACGAAGAGGAGGATGAAGAGGATGAGGAAGATTCGGATGCTGATAGCTGTGACAGCTGTCCAGACGATAAAGATGAGGATGACGAAGACCTGGACGAGGAAGAAGATCGATTACTCGCAGAGCAAAAGCCCATTGAACACGTTGATATAAAGGAAAACTTTCGCGTGGATCTTATGGCTGAGCATTATCCCACTGGTCAATTTCCACTCGATGGTAATCACCCATCGACGACACAGCAGCAGCAATCGACCATTGTTTCAATGCATCATGAAACCTATCCTCTGTCGGCGGAAATATCGCAAAATCCATTCAATATAACTGAATGCGTCGACCCAATGACCAGTACGGATTCAAAAAGCTACTCGAGTTCCAGCAAGTCAACGATGCAAAAACCAACGACTGAGTTATTGAACATTAGCGAGGACGCGCATGCGGGTCCCATAAATGTTTTTGAAATCGAAGAGCCACAGATTTATGTACCAAGTTCCTTTATCAGCGAGTCATCGCAGAAAGCCGTGAGTGGCACGAGCCACCAGTCGATGTCCAGCAGCGAAAATGGTGCTGGCAACGACGAAGAGGTCAAAAGCGTGAATATGAGGGCAGATGAGACGATGCCACCAAGAGGAGAATTGTCGGAGCAAGAGAGCAACGGTTGCACTGAGCAGTCAGCTTGGCAGCTCTATATGGGACATGACTCATCGCGTATGTCGACGTCTTACGATCTGATGGCGCGCGAGAGTTGGGAGGAATCGGAAGGTTCGGATCACGAGGAAAATAACGGAGGACCTCTTCTGGACAGTCGTTCTCTCGCCACTCATTTCACCGCGAGTCTCTTTCCGGATCGCGACCGCAAAACGCCGACGCGACGTATTTTCAAGTGCGCGCACTGCCCGGAAGAGTTCGAAGGTCCCAAAGAGCGTCGTGTTCACAGTACAATGGTACATAAAGAAGCTGGTCCATCGGGATACAGCAACGACAATATGGACAATCAGCAAGAATTAAAAGATATCAAACTGCTCGATGGACGCGCTAACGTTTTTGAAGACATGTTCTTGCCCGGTAGCCTACAACAGGCTTACCTACATCAACAGCCACCTTTACTGCATCAATTGCAACCACCTCAACACTCAAGTTCTGCCAAAGTCGATACCGATCCGAAAATCGACGCGCAACATCTATTGACCGTAAACGAAGTTACTTGCAATCTGTGTAATCAACGTTTCAGCAGTGAAAAGTCACTTCAGATGCATCACAGGCGTATGCACGCAGCCGAACCTGTAAAACGCGTGCGCGAAAATGTCAAATGTCAAATTTGCAGCGAGGAATTCACTTCCGTTGCCAGCTTCAATCTTCATTTAAAGATACATCCCCTGGAATGCGGACAGTGCGGCAAGTACTTCTATCGCAAGCAGAATTTCAAACTCCACATGAAGCGCCATCTTGGTATCAAACCATTCCCCTGTACACTGTGCGACAAAGCCTTCTTGACGAAGCAAAAACTCGACGAACACACGAACGGCCATACAGGTAATGCTCCCGTTAAGTGTAATCTCTGCAATGAAACGTTCAGGCGGTACTCGAATCTGACACAACACAAAAATCGCCATCATCTCAATATAAAAAAGAAGCTGAAAGACTACATCTGCCATTGCGGTGAAGTCTTCCACACGAAGAAGAAGCTTGCGTGGCACAAGGAAACTCACGACGAGAAGCCAAAGGCTTGTACCTACTGCAACGAGCGTTTCATCCACATGGCTAGTCTGACCCGTCACATGCGTCGTGCCCATAATCGTCGTTTCGTGCCCGACGCCCAGCGCGAAAGCGAAAACGTCGAGTGCCCGATTTGCAAATGTATTTATTTGAGGTCATCGCTAGCGGTTCATATGCGCGTGCATAACGGCGAACGACCCTACGAGTGCCAGGTTTGCTCGAAAGCCTTTAGCACCAAGTGGAATCTGCAGCTACACAAGTGGACTCATGCGGCGCGTAGTACCAAACCATTTAAGTGCAATCAATGTAGCGCTGCGTTCTATCGGAACAGTGACTATACGGCTCACATTAATTCTCATCGAAATGTTAGGCCGTATACGTGCAACTACTGCGGCGCTCAGTTTATTAGGAAATACAATTGCCTGCGACACGTTAAGGAACACGAGGAAAATAAAGCGTACACCTGCGACATCTGCAACAAAACTTTCCATAGGTCGTATTATCTCAAGGAGCATCTACGGGTGCACTCGGGGGCACGTCCCTATACCTGTCATATATGCGGCAAATCGAGTAGCACCAAGTCCAATCACAATAAACACGTAAGGATTCATCACGCTCGCGAACCCGTTAATACGGAGAATTAA
- Protein Sequence
- MDLSSAVSAMSPGGSSGGGGGAVACPVCTLYLREGISLQKHLDTHPKEQQQQPPSASPSPHVPHAQSPYPIGPIFECPPINAMIPPPQFASFSYQQFVNNGTMMIPAQYAMAQAQASPSSQMMQMLYSPYGMYHQQQIPTVQMISAPPAMMPTSTTTLPTTVPAVTTRMRPATSTSNITITETPTSTPMPVSPPRTTSCVQPQQQSQPETQTQQLDVEQSSKQQPTQIIHEIIPGPDRILPDLEMPPSPEPTHVEPEHEEGDDEHREQQTRNTCADQEAQPNVDQYQSESPPILISNSCEDTADDDKTERILPDIEDNEEIESLIVRTAENRVESDNDAERQESTSVEQMEIVTNEEIPQKDSVENIECSEKLESSGELVDKSNDDKVICEITEPQDLTTEESRINNVIIHKSETDQIDRMLDNMESEFSNVELNAKGDEEAQNEKPQGEIQDALSEEPVEKHTEDDDNTSVLYHKNSPEPIECKIIHAHEDTDVSSVISSDSIHCDMEIQNIITSAYHYKCSQSLPASPIIKKHFYRSLSRASQRSDFDQSNENLCPYPVGFEATSLQDYLKTNFNDEDMELEEPVPHSYLKQSSGIIAERAKSHSSLSVNMSGVSVLKARRSKVPTSSVSTHSGFSYGQMDEEEDEEDEEDSDADSCDSCPDDKDEDDEDLDEEEDRLLAEQKPIEHVDIKENFRVDLMAEHYPTGQFPLDGNHPSTTQQQQSTIVSMHHETYPLSAEISQNPFNITECVDPMTSTDSKSYSSSSKSTMQKPTTELLNISEDAHAGPINVFEIEEPQIYVPSSFISESSQKAVSGTSHQSMSSSENGAGNDEEVKSVNMRADETMPPRGELSEQESNGCTEQSAWQLYMGHDSSRMSTSYDLMARESWEESEGSDHEENNGGPLLDSRSLATHFTASLFPDRDRKTPTRRIFKCAHCPEEFEGPKERRVHSTMVHKEAGPSGYSNDNMDNQQELKDIKLLDGRANVFEDMFLPGSLQQAYLHQQPPLLHQLQPPQHSSSAKVDTDPKIDAQHLLTVNEVTCNLCNQRFSSEKSLQMHHRRMHAAEPVKRVRENVKCQICSEEFTSVASFNLHLKIHPLECGQCGKYFYRKQNFKLHMKRHLGIKPFPCTLCDKAFLTKQKLDEHTNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKKKLKDYICHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRESENVECPICKCIYLRSSLAVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRNSDYTAHINSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDICNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSSTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01274744;
- 90% Identity
- -
- 80% Identity
- -