Basic Information

Insect: Apocrypta bakeri
Gene Symbol: -
Assembly: GCA_018906985.1
Location: JACCIA010000002.1:3161920-3169430[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.047 3.4 8.1 4.2 1 23 436 458 436 458 0.98

2 18 4.9e-05 0.0035 17.5 1.1 2 23 494 515 493 515 0.95

3 18 0.0006 0.043 14.1 3.5 1 23 521 543 521 543 0.99

4 18 0.0017 0.12 12.7 0.1 3 23 551 572 549 572 0.93

5 18 0.36 26 5.3 1.8 1 23 579 602 579 602 0.98

6 18 5.6e-05 0.004 17.3 1.2 1 23 606 628 606 628 0.97

7 18 0.012 0.85 10.0 0.6 1 23 634 656 634 656 0.95

8 18 5.3e-05 0.0038 17.4 1.3 1 23 662 684 662 684 0.97

9 18 0.00098 0.071 13.4 0.1 1 17 689 705 689 706 0.90

10 18 0.09 6.5 7.2 1.3 1 20 1145 1164 1145 1167 0.89

11 18 5.4e-05 0.0039 17.4 2.1 1 23 1202 1224 1202 1224 0.98

12 18 0.015 1.1 9.7 0.8 1 23 1230 1252 1230 1252 0.98

13 18 0.00017 0.012 15.8 0.4 2 23 1259 1280 1258 1280 0.97

14 18 4.1 2.9e+02 2.0 0.7 1 23 1286 1309 1286 1309 0.89

15 18 0.00011 0.0081 16.4 2.0 1 23 1313 1335 1313 1335 0.97

16 18 0.014 1 9.8 1.0 1 23 1340 1362 1340 1362 0.98

17 18 1.9e-07 1.4e-05 25.1 0.5 1 23 1368 1390 1368 1390 0.98

18 18 1.6e-05 0.0011 19.1 0.2 1 22 1395 1416 1395 1416 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.047	3.4	8.1	4.2	1	23	436	458	436	458	0.98
2	18	4.9e-05	0.0035	17.5	1.1	2	23	494	515	493	515	0.95
3	18	0.0006	0.043	14.1	3.5	1	23	521	543	521	543	0.99
4	18	0.0017	0.12	12.7	0.1	3	23	551	572	549	572	0.93
5	18	0.36	26	5.3	1.8	1	23	579	602	579	602	0.98
6	18	5.6e-05	0.004	17.3	1.2	1	23	606	628	606	628	0.97
7	18	0.012	0.85	10.0	0.6	1	23	634	656	634	656	0.95
8	18	5.3e-05	0.0038	17.4	1.3	1	23	662	684	662	684	0.97
9	18	0.00098	0.071	13.4	0.1	1	17	689	705	689	706	0.90
10	18	0.09	6.5	7.2	1.3	1	20	1145	1164	1145	1167	0.89
11	18	5.4e-05	0.0039	17.4	2.1	1	23	1202	1224	1202	1224	0.98
12	18	0.015	1.1	9.7	0.8	1	23	1230	1252	1230	1252	0.98
13	18	0.00017	0.012	15.8	0.4	2	23	1259	1280	1258	1280	0.97
14	18	4.1	2.9e+02	2.0	0.7	1	23	1286	1309	1286	1309	0.89
15	18	0.00011	0.0081	16.4	2.0	1	23	1313	1335	1313	1335	0.97
16	18	0.014	1	9.8	1.0	1	23	1340	1362	1340	1362	0.98
17	18	1.9e-07	1.4e-05	25.1	0.5	1	23	1368	1390	1368	1390	0.98
18	18	1.6e-05	0.0011	19.1	0.2	1	22	1395	1416	1395	1416	0.94

Sequence Information

Coding Sequence: ATGGAGTTCGAAGAGGATGAAGCCCAAGTTTGCAGACTTTGCGGTCAATCCGAAAGTATCTATATCGATGTTTTCGGCGAGGAAGGTACCAAGCGATTTCTCGGCTTCAAGATCCAGTCGAAAATCAACATTGTGATAGATGAGAGGGATCCTCTGCCCAAGGCGATCTGCGTTCAATGTCTAGGCAAACTTGAATTTGTTTGCGACTTCCAAGAGGAGTGTCTACGCACCCAGCAACTGTTACGCGATCAGTACAATCTACCACCTTTGTCAGACATTGAGGAAAATAAACCAGAAGAAAATAAATCTGAAGATTCTGCTCCGAGTACATCATCTAGTACTAAAAATAATGTAGCCATCGATGAGGGAAACAACACTGAAAGAAATCTAAACAACCATGGTTCAGTTGACAATAATATTAACAATAACAATAATAATAATGATAAAAATTTCAAGTCCCCCAACAATGAACTTTCTAAAGACGAGAGTTCCTCTGTAATCTCAAAAAATGCTACCAAGTCACAAAGAAGTCTTCGTAGTCAGCAGAATCAATCAAAAAGTTCTAACATAAAAAAAGAATCTTTGCAATCTTTACAATCACAAATTATCGATAGTAACAAGGAAATTTCTTCAAGTATACAGCAACCTGAAATCACAACAACTACTCGTAGACTGCGAAGCAGACAGAGCATAGATGTAGCTGAAAATGATACTAATATTAAAAATACCAAACGTGCCTCCATTACAAAGAAAAGACTGAGAAGTCACAATAACACTGTAGATAGTACAACTAATTCTAAATCAAGCATTGATGCAAATGAAAATGCTGGAAAGAAAAATCAAGCGGAACAAAATAACAAAATTCAGATTCCTACAAATACTTTGAATAAAGTATTGTCAGCCATTACCAATGCGCCTGGTATTGGGGTTTCTGTTAAGGAATCTACGAATCGTACAAATGATTCTGAAGATATCAGTTTTACTGTTGAATTATGCAAAAAGCAAGAAACAGAATCTTTAACTGTATTAGCTAAAGTTTTTCCTGATCAAGGTTCTTGCTTAGTTGATAAATCTATTGTTACATTCCTAGAAGATGGAACTAACGAGGAAGTAAATAATCTTGTTAACAATATTGTCAGTCCTAATACTTCAAAAGATGAAAAGTTCAGTTTAATCGACAAGTTACAAAATGCTGAAGACATTTCTAATAGTGCACGCAATCCAGAAGAACTTTTTAAAATGGATGGTGAAGAAATCCAAGTTAACGAAAATGTTGAACAAGTCACCGCAAACAATCAAGTAAGCTATGTTTGTAAACTATGTCGAAAAATGTATGAGCGCAAAGACAAATGCACTGTACACGTAAAAACTCATTTGGGTATAAAACAATACATGTGTATTTTATGTCAAGCCAAATTTGTCTGTAAATCAGATGTTATGAAGCATATCAGATGCTCGCACACTAATCCAAGACCTATTTCATGTCCACATTGTCCAAAAAGATTTAGATCTAAATTCGATTTAGCTGAGCACAATAATGTGCACAAGGGTGTTAAACCTTATCAATGCGCAGATTGTGACCAAAGTTATCATCATAAAGTCTCACTGCAAATGCATGTAAAATCACATATGCCTCCACAAAATTTAGCCTGCGAGTACTGTGGAAAGATTTTCCCTTATCGTACGAGATTGCTAAGTCACATCGGCAGTGTCCATATGAAAGATCGACGTAATTTCCGATGTCGTTTCTGTTATAACTTATACTCAAGTTTATCTGTTCTGAACGAACACATAAAAACTCGTCATACAACGACGTACACCTGCGAAACTTGCAATAAAACTTTTAAAGTAGCTTCCAAGTACAAAGCTCATGTACTGCAACACAGCAATCCAAAACCGTTTCTTTGCAAAATATGCAACAACAGATATGCATCAAAAGCATTTTTAAACGAACATGTATTAAAGCATCAAGGAGTACGCAAACATGTTTGCCAAAAATGCGGCGCTGCATTTGCACAAGCAAGTCATTTAGCTGCTCATCGTCATGTTCATGAAGAAAAAACTCATGCTTGTCCTGAATGTGGAAAAATGTTTAATAGACGTGATAACATGAAAATTAAGCCTGACGATGGACTACCTCAAGTAATATGTATGCGGTGTTTGGGAACATTAGAATTTTTATGCGATTTTCATAATATGTGCCATAATACTCAAAAGGATCTAGGATCTTCTGCAGAGGGAGAAAGTAGTAAAGAAAAACCAAAAGATAAAGTTGAGAGCGATGGAGAATCTGATAAAGAAAATGTTTTACCAACCAATAATGATAAATATAAAGCAAAATTGTCACAACCAGACCAAACAAAACTATCAGTCAGTACGAATGATGTTGAGAATACAGCTTTACAAGAAAGAGAGGTTAGAAAAGATAAAATTGCTGAAAAATCAAATGGTTCTTTGGTTGCAGAGGATTATGATTTGGATATTCCTAATCGTAAAAAAGCTAGCCAAAAGATCGGTGAAAAAGAAAAAACACCTGAGAAAATTGTTTCAAAAGATGTCAATTTACAAATAGAGAATACACCTGAATCCAATTCAGTAAAGAAACAAGTGCAACAAACTCGATCGACCAAATCTGAAAATATTGAAAAAAAGATTACTAGACGATCAAAAGCATCGCCATTGGTTGGAAATAAATTGAAGAAGAATGACACTAAACAATTGAGTAAAACAATTGATAAGTATTTTGGAAAATCAACTCCTCAACATAAGAATAATAATACAAACATTGAAAATGAGAATCGAGTTGAAATCCTGAACAAAAAAAATTCTGAAGATGCTGTAGAACAAAGTAATGTTATATTCGAAGGAACTATTATTAATTCTGCAGGTGATACTTCTATTATAATGCCTTTAAAATCAGAATCATTCAATAGCGATTTGAGACTTGAAAATATTGAAATGGCGGATGGCAGTGAAATTGTTCAAGCTCAAGAAATTATTTGGATATCAAATAATTCTCAATTACCCGAACCTGAAAAACCACAAACAATAAACCCAAAACAATCCAAAACTGCTAGTCCTGCTCCAGGAGATGAAGCTGAAATTATGAAAAAGGATGGAACCTTAGAAGTACAAACGTCTGGACAAGATATGGATCTAACTACCTCTACCGAAAAGTTAATTGTGCTTGAAGTACAATTGCCTGCCAAAGATAATTCAGTTGCTTTACCAAAGTGTACTGAAACCCTTAAAAGGAGCCGTACCATATCAAATGTTAGCTCACGTAGATCTAGTGAAGGTAAATTTGCCAAAATATCAGAGTTAATGACTGATAAACAAAAACGAGCCATTGAAGTACTTTATTCAATCGATATGACACTAGTTGACGAAACACAAGTTAATAAAAATGTAGTTACACTCGATAAATGCAAATACCAATGTAAAATATGTAATACTGTTTATCCACGTCTTGACAAATGCCAAGTTCATATTTGGCGGCACTTGGACATGAAACCGTATTTATGTAAAGCTTGTGAATTCTCAACCTTGACAGTCAGTAATATTCGTTGCCATATTAGAAAAAGTCATTTAAAAATTAAACCCTTCCAGTGCCATATTTGTAATAAACGTTACAATTCAACAACATTGCTCGAGGAGCACCTTAATGTTCACACTGGTTCAAGACCTTATCAATGTGATCTTTGCAAATTTGCAAGTACTAGTAAACAAGTTCTTGCGCATCATATATTGATTCATAAGAAAGAAAAGGACATTAAATGTGATATATGTGGAAAGGGATTTTATTCCAAAGGAAGAATGAAAGCTCATAAAATCACACACAACAAAGAAAAAGCATTTAAGTGTACTCTCTGTTCAACTTATGTTTTACACGAAGAAGCTCTGGAACGACACTACGCAAATGTTCATACTAAAGACTATGTGTGTAAAATTTGTAGCAAAGTTTACAAATCAAAGAAAGCTTTACATAATCACGAAAGTGTTCATTCTGACGCGAAATTCCAATGCCCAATGTGTCCAAATGTATACAAAAGTACTCACATATTAAAAGAGCATATTTTAAAACATCAGGGAATTCGACAATACAAGTGCAGTCGTTGCGATAAGGCCTTTGCTCAGCAATCACATCTTGCAGCACACATGGCTGTTCATAGCGATATAATGTTCCCTTGCCCTGGATGCGGAAAAGGATTCAATCGACACGACAACATGAAAGTTCACGCAAGACGTTGCGAGAAATTTTTGGCAAACCCAGAACTTTCAACAGCATTGAATAAAAGAAAAATAAGTATTTCGAAAAATACCACAGCTAAAGTAAGTAAACAAACCGAAATCGATAAAATTACTGAGCCAAAACAAACTCGTAAAAGCTTATACAGCGATTCCAATAAGACTGTAACTAATAAGCCAGTGGAAGAATTACAATCAAATGATAATGTGACTGTAGTTGAAAATGTATTGTCAACCCAAGAATTTTAA
Protein Sequence: MEFEEDEAQVCRLCGQSESIYIDVFGEEGTKRFLGFKIQSKINIVIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQLLRDQYNLPPLSDIEENKPEENKSEDSAPSTSSSTKNNVAIDEGNNTERNLNNHGSVDNNINNNNNNNDKNFKSPNNELSKDESSSVISKNATKSQRSLRSQQNQSKSSNIKKESLQSLQSQIIDSNKEISSSIQQPEITTTTRRLRSRQSIDVAENDTNIKNTKRASITKKRLRSHNNTVDSTTNSKSSIDANENAGKKNQAEQNNKIQIPTNTLNKVLSAITNAPGIGVSVKESTNRTNDSEDISFTVELCKKQETESLTVLAKVFPDQGSCLVDKSIVTFLEDGTNEEVNNLVNNIVSPNTSKDEKFSLIDKLQNAEDISNSARNPEELFKMDGEEIQVNENVEQVTANNQVSYVCKLCRKMYERKDKCTVHVKTHLGIKQYMCILCQAKFVCKSDVMKHIRCSHTNPRPISCPHCPKRFRSKFDLAEHNNVHKGVKPYQCADCDQSYHHKVSLQMHVKSHMPPQNLACEYCGKIFPYRTRLLSHIGSVHMKDRRNFRCRFCYNLYSSLSVLNEHIKTRHTTTYTCETCNKTFKVASKYKAHVLQHSNPKPFLCKICNNRYASKAFLNEHVLKHQGVRKHVCQKCGAAFAQASHLAAHRHVHEEKTHACPECGKMFNRRDNMKIKPDDGLPQVICMRCLGTLEFLCDFHNMCHNTQKDLGSSAEGESSKEKPKDKVESDGESDKENVLPTNNDKYKAKLSQPDQTKLSVSTNDVENTALQEREVRKDKIAEKSNGSLVAEDYDLDIPNRKKASQKIGEKEKTPEKIVSKDVNLQIENTPESNSVKKQVQQTRSTKSENIEKKITRRSKASPLVGNKLKKNDTKQLSKTIDKYFGKSTPQHKNNNTNIENENRVEILNKKNSEDAVEQSNVIFEGTIINSAGDTSIIMPLKSESFNSDLRLENIEMADGSEIVQAQEIIWISNNSQLPEPEKPQTINPKQSKTASPAPGDEAEIMKKDGTLEVQTSGQDMDLTTSTEKLIVLEVQLPAKDNSVALPKCTETLKRSRTISNVSSRRSSEGKFAKISELMTDKQKRAIEVLYSIDMTLVDETQVNKNVVTLDKCKYQCKICNTVYPRLDKCQVHIWRHLDMKPYLCKACEFSTLTVSNIRCHIRKSHLKIKPFQCHICNKRYNSTTLLEEHLNVHTGSRPYQCDLCKFASTSKQVLAHHILIHKKEKDIKCDICGKGFYSKGRMKAHKITHNKEKAFKCTLCSTYVLHEEALERHYANVHTKDYVCKICSKVYKSKKALHNHESVHSDAKFQCPMCPNVYKSTHILKEHILKHQGIRQYKCSRCDKAFAQQSHLAAHMAVHSDIMFPCPGCGKGFNRHDNMKVHARRCEKFLANPELSTALNKRKISISKNTTAKVSKQTEIDKITEPKQTRKSLYSDSNKTVTNKPVEELQSNDNVTVVENVLSTQEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01487247;
90% Identity: -
80% Identity: -