Abak013397.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- -
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000094.1:1-16606[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-10 3.5e-07 29.5 0.2 14 72 130 184 125 189 0.90 2 2 2.4 6.2e+03 -3.3 0.0 13 20 305 312 301 318 0.73
Sequence Information
- Coding Sequence
- GACAATGATAATTATTTCTTTACTGCTCAGAGAAGAGACCGTTTTTACGTAGTTAATGCTCATTATGAAGAAGAGAAAATTGAAGTTCACAACTCTAGTATAATCAGTGACGCAATGAAAATTCACAGGAGATTTTGCCACATTAATATCCAGAGCATATGTCAAATGGAGAAGGAAAAGATGGTACGAGGTATAGACAAAATTGAAGAAAACAAAAATGGAGTCGAAGTTTTATTTGGAAAAGGTAACACTGATGATAATAATAATAAATATTCGATTAATTTAGAAAATGAAAAATTCGAAGATGAAATTATAAATGATTCGAGAGATGATAAAATTATTAATCAGTATAGTAAAAATGATAATCTAAATGAAGACCATACGTCAAACTGGCTAAGAGTTGAAAGGCCGAGAACAACCGAAAGAAGGGTCGATGTATATTATTACTCCCCAGGTGATAATGTCAGGATGAGGTCTATCCATGATGTTAAGAGGTATTGTGAAGAGAAAAATTTGCATTTCAATCCAAAGAATTTTTGCTTTAAGCCTACAGCACCCAGAAATGATGAAAAGTTGATGGATTCAAAAGAAATGCACCCCAATAACGTGGACATTAATTTGGAGGAGATCGAAATAGCTCACGGAGAGGAGGAGAAGCTGGAACAGCGACCCGCACGACACGGACCCTGTTCACCAGCTGCACAGCCGGCCCAGCGCTTCGCATTCACGAGGACGACTCCCGAGTACAGTCAAGCCACCGACAAGCGAATTCCTAGCGACAACGCCGGCTCACCCGAGCCTATCAAAATAACACTACAAGGAAGCGCTGCTTCCCAAGCCGCCAGCCCGCTTCACGCTGTGACGCGGAGCCATCCGGACCAACTTCAGGGATCGTCGCAACAAGCAACGTCCACTGACTGGAGACGCAGCCCCAGGAAGCCCGGCGAACCAGCTACATCCCACAGGGAGGTTCCAGACCCGGCACCAGCTCCTCCAGAAGTCCAGGCTTCGACAGATTCAACGACGCGACATCGCGTCCTCAGCGCATCATCTAAAAACCTTCACGTTTCCGCCGCAACACGCGGTCTTAACGGCAACAGCGCCGTTAGCACAGCAGCGCCACTCCGCGCTTCCGCCGCAACTAGCGGTAACAACGGCAACACCGCCGTTAGCAAAGCAGCGCCACCTCCCGGCACAGCGATGACTTCACCGTTAGGCAGCGCCACCATGCGGTCGTAA
- Protein Sequence
- DNDNYFFTAQRRDRFYVVNAHYEEEKIEVHNSSIISDAMKIHRRFCHINIQSICQMEKEKMVRGIDKIEENKNGVEVLFGKGNTDDNNNKYSINLENEKFEDEIINDSRDDKIINQYSKNDNLNEDHTSNWLRVERPRTTERRVDVYYYSPGDNVRMRSIHDVKRYCEEKNLHFNPKNFCFKPTAPRNDEKLMDSKEMHPNNVDINLEEIEIAHGEEEKLEQRPARHGPCSPAAQPAQRFAFTRTTPEYSQATDKRIPSDNAGSPEPIKITLQGSAASQAASPLHAVTRSHPDQLQGSSQQATSTDWRRSPRKPGEPATSHREVPDPAPAPPEVQASTDSTTRHRVLSASSKNLHVSAATRGLNGNSAVSTAAPLRASAATSGNNGNTAVSKAAPPPGTAMTSPLGSATMRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -