Abak013255.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- -
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000028.1:558434-561037[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-10 7.6e-07 28.4 0.2 14 72 538 592 533 597 0.90
Sequence Information
- Coding Sequence
- ATGAAAGTTATGCTGATTGATCGCGGATCGTGGGATTTTGTGGCCGGAACGGCAGAAACAGTAGTGACAGACGCGTCTAGTGCTGTAAAAGCAGATTACAGAAGGAGAAAAGAAAGAGCCTATACGACAATTTACCAGGGCATCGAGAGACAGTTCCAACCATTGATTGCCAGCACGCTAGATGGGAAGGAATCCTGGGATATTTTGAAGGATAATTTCGAGCCGAAGTCACGAGCACGCCTGGCAGGCCTTATAGATGATTTCTACGACATGAGGCTCAATCCTGATGAAGAGACCGTCGGCATATTTTGCAGAAGGGTAAATGAAAAATCTACTTTAATTAAAGATGCTGGTTTCGTTATACCAGACACGTTGAAATGTTTTCAATTGATAAGAAAGTTGCCTTCAGATTACGATAATTTAGTCCAAGTATTGTATAGATCGGACGATGATGATTTTAATTTTACAAAAATTGAAAAACAATTAATTACAGAAGAAGGTAGAATCAAACAGAAAAGAAAAGACGATGGATTAGAAAACGTTATTAATGCATATTTTACCACGAAAAATGAAAATGTGAAAAATTATAGTAAATCAGAAAATAAAAATGGAAATTGGTACAATAGAGAATCATGTCAACAGAAAAATAATAAAAATGTTACATGTAACTATTGCAAGAAAACTGGTCATATAAAAAGGCAATGTTTTACTCTGAAAAGAAAACAAGAAAATGAAAAGAATAATTATGATAGAGGTACTGAGAAAAATAAAGCTTTTTACACTGAAACCGATATTAAAATTCGTGAGAAAAAGAATAATCATGAAGTGCTTTTGAGCAATGTTGAAGAAAATTCTGATGAATGGATAATTGACAGTGGAGCCACGTCTCATTTTTGTACAAAAAAGGTACATTTAGAAAATTTTGTCGAATTGCCACCTACTGAAGTATTGGTCGGTGATAAGAATGCTAAATCGAAAGTTATTGGTAAAGGCGATACAACGTTTTATTTGAAAGAAACCGAGAAGTACATTAAGATAAAGCTGAAAAACGTATTATATGCTCCAAGTATGAGAAGAAATTTAATAAGTGGAGCATGTATGGACATTGCCGGTTTTGATATTCGATGGAAAAATAATAAGATGATAATTTATGACGAGAATGATAATTATTTCTTTACTGCTCAGAGAAGAGACCGTTTTTACGTAGTTAATGCTCATTATGAAGAAAAGAAAATTGAAGTTCACAACACTAGTATAATCAGTGACGCAATGAAAATCCACAGGAGATTTTGCCCCATTAATATCCAGAGCATATGTCAAATGGAGAAGAAAAAGATGGTACGAGGTATAGACAAAGTAAACAATGAAAACATAAGATGCGACGTTTGTGCAATCAGTAAAGCAACTCGCTCGTCCTTCAAGAGTTTACCGGCAATAATGTCAACAAGTATTTTGGAGAGAGTATACATGGATGTATGGGGACCATCTCCAGTTACATCAGTAGGCGGTGAAAATGAAGAATTCGAAGATGAAATTATAAATGATTCGAGAGATGATAAAATTATTAATCAGTATAGTAAAAATGATAATTTAAATGAAGACCATACGTCAAACTGGCTAAGAGTTGAAAGGCCGAGAACAACCGAAAGAAGGGTCGATGTATATTATTACTCCCCAGGTGATAATGTCAGGATGAGGTCTATCCATGATGTTAAGAGCTATTGTGAAGAGAAAAATTTGTATTTCAATCCAAAGAATTTTTGCTTTAAGCCTTCAGCACCCAGAAATGATGAAAAGTTGATGGATTCGAAAGAAATGCACCCCAATAACGTGGACATTCATTTGGAGGAGATTGAAATAGCTCACGGAGAGGAGGTATTATTTGTCGACATCCCAAGGACTTATTAA
- Protein Sequence
- MKVMLIDRGSWDFVAGTAETVVTDASSAVKADYRRRKERAYTTIYQGIERQFQPLIASTLDGKESWDILKDNFEPKSRARLAGLIDDFYDMRLNPDEETVGIFCRRVNEKSTLIKDAGFVIPDTLKCFQLIRKLPSDYDNLVQVLYRSDDDDFNFTKIEKQLITEEGRIKQKRKDDGLENVINAYFTTKNENVKNYSKSENKNGNWYNRESCQQKNNKNVTCNYCKKTGHIKRQCFTLKRKQENEKNNYDRGTEKNKAFYTETDIKIREKKNNHEVLLSNVEENSDEWIIDSGATSHFCTKKVHLENFVELPPTEVLVGDKNAKSKVIGKGDTTFYLKETEKYIKIKLKNVLYAPSMRRNLISGACMDIAGFDIRWKNNKMIIYDENDNYFFTAQRRDRFYVVNAHYEEKKIEVHNTSIISDAMKIHRRFCPINIQSICQMEKKKMVRGIDKVNNENIRCDVCAISKATRSSFKSLPAIMSTSILERVYMDVWGPSPVTSVGGENEEFEDEIINDSRDDKIINQYSKNDNLNEDHTSNWLRVERPRTTERRVDVYYYSPGDNVRMRSIHDVKSYCEEKNLYFNPKNFCFKPSAPRNDEKLMDSKEMHPNNVDIHLEEIEIAHGEEVLFVDIPRTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -