Ahis001357.1
Basic Information
- Insect
- Apocheima hispidaria
- Gene Symbol
- -
- Assembly
- GCA_947579745.1
- Location
- OX388148.1:12329356-12339083[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.011 0.68 10.7 0.9 3 23 209 230 208 230 0.90 2 24 1.9 1.2e+02 3.7 1.5 3 23 590 612 589 612 0.84 3 24 0.028 1.8 9.4 0.3 1 21 617 637 617 638 0.96 4 24 4.8 3e+02 2.4 0.2 1 23 679 702 679 702 0.89 5 24 0.00021 0.013 16.1 1.6 3 22 713 732 713 732 0.96 6 24 0.2 12 6.8 0.2 3 23 741 762 739 762 0.95 7 24 0.15 9.3 7.1 0.6 3 23 783 804 781 804 0.95 8 24 0.0016 0.098 13.4 0.8 1 23 810 833 810 833 0.92 9 24 0.097 6.1 7.7 0.0 1 23 859 882 859 882 0.90 10 24 0.0042 0.27 12.0 3.5 1 23 887 909 887 909 0.97 11 24 0.0012 0.076 13.7 0.2 1 23 915 938 915 938 0.96 12 24 0.0023 0.15 12.8 1.5 1 23 946 968 946 968 0.97 13 24 0.00014 0.0086 16.7 1.8 1 23 1017 1040 1017 1040 0.97 14 24 0.0055 0.35 11.6 1.4 1 23 1100 1123 1100 1123 0.96 15 24 0.0016 0.099 13.4 1.5 2 23 1149 1171 1148 1171 0.95 16 24 0.22 14 6.6 0.1 3 23 1178 1199 1177 1199 0.94 17 24 0.0077 0.48 11.2 0.2 1 21 1243 1263 1243 1264 0.95 18 24 0.00095 0.06 14.0 0.6 1 23 1274 1296 1274 1296 0.93 19 24 8.7e-05 0.0055 17.3 0.3 2 23 1392 1414 1392 1414 0.93 20 24 5.9e-07 3.7e-05 24.1 1.3 3 23 1421 1441 1420 1441 0.98 21 24 0.0028 0.18 12.6 0.2 3 23 1460 1480 1459 1481 0.96 22 24 0.16 10 7.0 0.0 1 23 1502 1524 1502 1524 0.98 23 24 0.021 1.3 9.8 0.6 1 23 1530 1553 1530 1553 0.95 24 24 0.0002 0.012 16.2 0.4 1 23 1561 1584 1561 1584 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACACGGAACCTCCCGTTCTCGTCACGAAAATCAAGGATTGCGTGTCGGTCCAGATAAACGAAAATGACGAACTGCCGACGAATGTCTGCAAGAAATGCATGGACAATGTCAATAACTGGCATATATTCAAGACTGTTTGTGAAAAGACACAAAACAAACTACAGTCTCTGATTAAAAAGGATGGCAGCCTACTAGAAGAGGTGAAAGTAAAGAGTGAACCATTTTATGATGAGGCATATGATGATGGAGTGGTCATTGATGGTTCCTACCCAATCATTGAGAATACGGCTTCAACAAGCAAGCTCCAGCCTGAAGGTCCTCCGATCCTGGCTTCTCTTGGGCTCACTCCAAGGAGTGATAAGGGGGTGGAAAGTGAAAACAATGAAGAGGACGATTACGAGGAAGAGATAAATGATCCTGAACCACCTCAACCGGTAAAGGTGCCCAACATGCCCGAAGTGTCCATCACAGTTATGCGCAATACTGGAGAAACACTCCACGCGCGGCAAGGCATACAACAACTCGCCTCCAAGGACTGCCTTATCTGCGGACGCACTTATAGATACTCTCACAATGCTCGTAGGCACGAACTAGCGTCCCACAGTTTCGATCGCTACACGAATAAAGTGACAAACAAGAAGTCGCATCATTCCCGCATGATGCCTAAACTCAGACCCAACCCCTTTAACCCAAAAGCCCGTCTCATGCCAAACCCAATCAGCCACAAGCTTCAATTCATGCCTAAAAGTATTCCCGCCAAAATAATACAGCAGAAAGTCAACCCTCAACCGAGACCGATTCCCATCAAAACTCTCAAGCCATCGCAAAATAATCTACCGTACCCCTTACGTATAAAAGCGCTGAAAGATTTGCAGATAAAGAAAAAAGAACCTCAGATTTTGAAGACATTGCTCACCTCGAAACCCGAGGTGTTAGTGTCGGAGCCAGAAATAATGAATTCCGGTCCGGAAAGTCCAGAAACGCTGATATCCGAGCCGGAGATCGCGTCTTTTCAGGTAGAAGCTATTCTATCGGAGCCTAATGAATACGACCAAAATCAAGACGAAGAAGGTGAAATGGAACACGATAATCAGGCTCAAAATTACGATACCGTCGACATGGAGTCAGATCACGAGATTGAGATAGCTCGTCAGCAGGAAAATGACGTCGGTGAGGTAGAAAAGAATGACTTTGTTGAAAACGACGAGAATACAAATCAAGATCGGGATCAAGATAATCATGTCGATGAGGAGAAGCATGCCGAAAGCGAAAATGAAGGAGACCAAGATACCGTTGACAGTCAGGGAAATATGGAGATAGATGAAAGCTGCACTCACGCAAATATCGAAGACTTAGGTAAAATGGATAAAGATAAGAACGACGACGGCGATAACGATGAAGGCGAGAATGATGAACAAGAAGTAAATCCCGAGGTGGAAGAGAATGATGACGACGACGAAGACATGCCGCCACCTCCCGTCGTAGAACTAAACGAGGAAATGCAGCATTCCTCGAGTGAAATGAACGAGGAAGATGAAGAACTCGACGAAACAGCCGATCTCAACGAAACGGTCGACAAACCGACAGAACTTGACCCAGACAAGACTTACGTCACTAAATCACAAAAAGATTTCATCGAAAAGTACCGCGACGTCATCCAACAGATTAATACGAAAAGGTGCCTCTGCTGCGATAAGACATACCCGCGCAGGAAGGCGGTCGTTCAACATTTACAGAAAAATGGACACAAAGTTCCCAAACATACGTGTTATAACTGCGTGATCACGTTCACTCATATCGGTGCGCTGCTAAGTCACATGCGAGCAAACGCTTGTACCGATCTTTGGAAAATCGTATTTGATAAGAACGGTATTCCTGATGATATGGTCATCAAGTATGAACCTCAAACCAAGATCCAGCCTAAGGACATTTTCAACGCCCGTTCTTACGCGTGCAGACTTTGCCCAGCCAAGTTCCAACTGAAGCAATCTATAATGAAGCACGTATTGGACGTGCACGAAGACGGTCAGTCGAATATTCCGCTCGGCTGTGTCCACTGCCGCACCAGCTTCAAAGACAAGTCCCTGCTCAAGAAACATATTCGCGTCGGCGAGTGCACAGTATACATCAACTGCGATCTGTGCTCGGAACAATTTTCGAACATGCAAGACTTCAGCGATCACGCTCTGACGGTACACGCCGATCATTTCGAGAAGTCCGACAATCAGAACAAATGTATCGACGGTCGAGCCACAGACTGCTCTCTTTGCGGAAAGAAGAACAGCAACTACCTGAATCTTGTGAAACATTTGAAGTTGGTTCACAACGAAGACAGGCCGCATTACTGTCAAAATTGCGATGCTAAATTCGAGCAAGCCGCAGACTTGAATAAACATATTTATGCCAAGCATTCTGACCAAGCATTGGGAATGACACCTCAAGAGCCGGACATGTCTCTAGTGAAAGAGGAAGCGGAAGAGTACCACTATTCTTGCACGGAATGTAACGCGATATTTGAAACTGTCGACGCCTGGACCGACCACCAAGTGGCGGAACACAACCAAGTCGCCCATCACTGCGACCAGTGCGACAAAAAGTTCTTGCGACCGTCAGAACTAGCCGAACACAAAAATACTCATTTAAGAGTCAAGTTCTACTCTTGCAATGTATGTCCCAATTCGTACAGTACTCCTCAAAAGTTGTCCGAGCATATACAGCAAGCCCATCCCGTCGGGGGCGAGACTGAATTCTTTTGCGACGTATGCATTCGATCGTTCAAAAGTCGTCAAGCCTTCTCGAACCACATGCGTATCCACGCTAAAGTGCCGACTACAAACAGAAAACCGGGTGAACAGAAAGGGTTCGACCCGCGAATCATCGGAAAACCAGTCAAACAATTCACCATGGTCCAACCTGGTTTCGTCAACTTCAAGCCGAACGCGAATGTTCCTAATGCACCTTACTCGTGTGATATTTGCGGTAAAGGCTTCATGCACAAGAAAAACATATGGAAGCACAAAAAAGTATTGCACGCGGATATTATCAATGATAGGAACGATAGCGAGGATAATACCATGCACGCCTCCACGGAAGATGACGATTACAATCCCGACGAGAATGGAGCTCTTTCCACGCCTCAATTCAACAGCTTCAACTTCTCCAACTTCAGTAACAGCACCCCACAGCAACAGCAGCAAGATGCCATGCCGTATTCTTGCGAGCTATGCTTCAAGCGATTCCCAATTAGGACCAGTCTGTGGAAGCACAAACGCGCTAAGCACGGGATCGTGAACCCCGGTGCGAGCGCCGGCAACGAAGCGCCGGCGCAACCGAAGTCCGGAGAATCCAGTCGCTCCAGCTGCACAATTTGCAAAATAACTTTCGCAGACAAGAAATCATACTACCGTCACAGGAAGAACGTTCACAAAACGGCCACGGAGATGTGCAAGCTTTGCGGTAAACCGCTGAATTCGACCTTGGAACTGTACGAACATCTAAAGGCCGCACACGCTCGGGAACTACTCGGATACAACGCCAACCAAGGCTCGAGTAAAACACAGGACGTGTCCCAGGATCAAGATGCCGATTACGAAAATGAGACTGAATCGGCCGACCCCAGCATGGACTACCAGGCGCGATACCCCTGTGACACTTGCGGGAAACAGTTTGTCGGTTTACTCGCCTTACAGAACCATCAGTGTATAAACCAGCTCCCGCAACAACCGCAGACCTTCGACTGCGAAATCTGCCACAAGAGCTACACGTCTATCGCGGCATTGAAGAGTCACCGCGGTTGGCACTTGCGCTCCCCGGACGGTAAGGCGGCTGCCAACAACAGCGGGCTGTGGATGCCGCAACACAAAGTGACGAGTAAGGTCAGCAAACACGAGGTTGTCGACGCGGTGCAGTTGGCTCGGGTCGCACACTCGACACCCGCCTCGCACTCGGCCCCCGCCGCGGCCGTCACGGCCAAAAGGAGACTACCACCGGAAGTGGAAGTCACAGTCGTCAATCCCAACAAAAAAATGCGTTCCGACGACTCGGTCGAATTGGATCAACAGAACAGCGAAGCGACTGACGGCCGATACTGTACCATCTGCGACAAAGAATTCACAAAACGCGCCGCTTACCAGCGTCACATGGACGAGGTCCACCAACCGAATTCCGTATTCTGTCCGGTCTGCGATAGAAGCTTCACGAGAAAATCGACGCTTCTTGTGCATATGAAGAAACATTACGAGAGCGGAGAGGGCACGTCTTCGGTGCAGATGGACGATGACGGTCACGGCTGCGACGTTTGCGGCGCTGTGTTCGAAAGTGAAAAGGGTTTGAAGGCTCATCGGGCGAGGCATCACGCGGAGGAATCTGGGGAGTCTGAAGACGAGGGCAGTGCCCCGGCCGCGCCCCCGGGGGAGTTCACATGCGGGCAGTGTGGCGACGGTGTTGCCAGCCCGCGCGATCTGCTCGCTCACCGCTCAATGCACGCAACTCCCACCAAATTCTTCTGCAACATTTGCAAGGTTTACTTCGCGCGAGCTCTCGATCTCTCGTCGCACACTCGAGCGAGACACGCGGACAACGACAAAGTGTTTTTTCCGTGTGCGATGTGTGACCGCTTCTATATGAACAAGAAGAGCTTACAGCGGCACATTGAAATGGCGCATTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDTEPPVLVTKIKDCVSVQINENDELPTNVCKKCMDNVNNWHIFKTVCEKTQNKLQSLIKKDGSLLEEVKVKSEPFYDEAYDDGVVIDGSYPIIENTASTSKLQPEGPPILASLGLTPRSDKGVESENNEEDDYEEEINDPEPPQPVKVPNMPEVSITVMRNTGETLHARQGIQQLASKDCLICGRTYRYSHNARRHELASHSFDRYTNKVTNKKSHHSRMMPKLRPNPFNPKARLMPNPISHKLQFMPKSIPAKIIQQKVNPQPRPIPIKTLKPSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIMNSGPESPETLISEPEIASFQVEAILSEPNEYDQNQDEEGEMEHDNQAQNYDTVDMESDHEIEIARQQENDVGEVEKNDFVENDENTNQDRDQDNHVDEEKHAESENEGDQDTVDSQGNMEIDESCTHANIEDLGKMDKDKNDDGDNDEGENDEQEVNPEVEENDDDDEDMPPPPVVELNEEMQHSSSEMNEEDEELDETADLNETVDKPTELDPDKTYVTKSQKDFIEKYRDVIQQINTKRCLCCDKTYPRRKAVVQHLQKNGHKVPKHTCYNCVITFTHIGALLSHMRANACTDLWKIVFDKNGIPDDMVIKYEPQTKIQPKDIFNARSYACRLCPAKFQLKQSIMKHVLDVHEDGQSNIPLGCVHCRTSFKDKSLLKKHIRVGECTVYINCDLCSEQFSNMQDFSDHALTVHADHFEKSDNQNKCIDGRATDCSLCGKKNSNYLNLVKHLKLVHNEDRPHYCQNCDAKFEQAADLNKHIYAKHSDQALGMTPQEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYSCNVCPNSYSTPQKLSEHIQQAHPVGGETEFFCDVCIRSFKSRQAFSNHMRIHAKVPTTNRKPGEQKGFDPRIIGKPVKQFTMVQPGFVNFKPNANVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIINDRNDSEDNTMHASTEDDDYNPDENGALSTPQFNSFNFSNFSNSTPQQQQQDAMPYSCELCFKRFPIRTSLWKHKRAKHGIVNPGASAGNEAPAQPKSGESSRSSCTICKITFADKKSYYRHRKNVHKTATEMCKLCGKPLNSTLELYEHLKAAHARELLGYNANQGSSKTQDVSQDQDADYENETESADPSMDYQARYPCDTCGKQFVGLLALQNHQCINQLPQQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDAVQLARVAHSTPASHSAPAAAVTAKRRLPPEVEVTVVNPNKKMRSDDSVELDQQNSEATDGRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDRSFTRKSTLLVHMKKHYESGEGTSSVQMDDDGHGCDVCGAVFESEKGLKAHRARHHAEESGESEDEGSAPAAPPGEFTCGQCGDGVASPRDLLAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNDKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00635610;
- 90% Identity
- -
- 80% Identity
- -