Ahis014886.1
Basic Information
- Insect
- Apocheima hispidaria
- Gene Symbol
- -
- Assembly
- GCA_947579745.1
- Location
- OX388157.1:14901027-14906637[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-11 3.9e-08 33.1 0.0 4 39 143 179 140 183 0.90 2 4 1.6e-11 2.6e-08 33.7 0.3 2 39 195 232 194 235 0.92 3 4 4.7e-16 7.6e-13 48.2 0.2 2 45 250 294 249 294 0.96 4 4 1.7e-18 2.7e-15 56.0 0.0 1 43 301 344 301 346 0.93
Sequence Information
- Coding Sequence
- ATGCCCGGGAACGGACCGTTTCAAGTGAAATGTGAGCCACCATCTGATGAAGAAGATAACTGCCCGCAACTATCTCATACATTTTCTAAGTCATCATCTAATCTGGAGGAGCTGGCACCGCTGGCGCCGGCAGGGCCCGCCGCGACTCCAGTTGCCGTGAAGCAAGAGCCGGTCGATACATTCACGCTCACGTTAGAGACCCTTGAATCTAGCCCCCATAGCACGGGAAATACGATACTGGAGAGACATATAGCGATGCTGGGTTCCACTGGAGAGCTTCATTCTGAACGTTTTACGCCTTTGCTAATCAAAGATGAACCTTTATCAGAAGGTGAGTTCCAACACCTGAGCAGCGATGAGACAAGCGACGGGTGCCGCGAGTTGGAGCCGGCGGCGCGTGGCAGTCCCAAGAGCTGGACGCAACGTGACATGGACAATGCGCTCGACGCGCTGCGGAACCACCACATGAGCTTGACTAAGGCGTCAGCCACATACGGCATTCCATCGACGACGCTATGGCAGCGCGCACATCGCCTCGGCATCGACACGCCCAAGAAAGAAGGTAGCGCCAAATCATGGTCAGAAGCCGATCTGCGAGGGGCGCTGCATGCGTTGCGAGCCGGAGCCATCTCCGCCAACAAGGCTAGCAAGGCTTATGGAATACCAAGCAGTACTCTTTATAAGATAGCTCGTCGTGAGGGCATCCGCCTTGCAGCTCCATTCAATGCAGCGCCGGTGTCATGGCGGCGCGGTGATTTAGCACGAGCACTCGCCGCTATCCGAGCCGGCGCTGCTTCCGTGCAGCGCGCCGCTGCACAGTATGGGATACCCACTGGAACTCTCTATGGGCGATGTAAAAGGGAGGGCATAGAACTGTCACGATCCAACCCCACACCTTGGTCTGAGGATGCAATGGGAGAAGCTTTAGAAGCAGTCAGAGTTGGCCAGATGTCAATAAATCAAGCAGCCATTCACTATAACCTGCCATACTCTTCCCTTTATGGAAGATTCAAGAGATGCAAATATCTAGCTCAGAATCAGCCAGTAGCACAGCAAGAAATTATCCATAACTCCGAAACGGCGGCCACTCATCAACAAGACGTATCCTATTACCAGCAGACCCCACAAATGCCTCAACCAGATCACATCATCGCTAATCAATACGCTCAGAACGACTACATTCAACATACATCAACACCCAGTAATGTTTTAACACAAGACCCGTATAATGGACAAACAATGTATTACAACCAGTGCTTTAACGGCATCGCTACAAGCTGA
- Protein Sequence
- MPGNGPFQVKCEPPSDEEDNCPQLSHTFSKSSSNLEELAPLAPAGPAATPVAVKQEPVDTFTLTLETLESSPHSTGNTILERHIAMLGSTGELHSERFTPLLIKDEPLSEGEFQHLSSDETSDGCRELEPAARGSPKSWTQRDMDNALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLARALAAIRAGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYLAQNQPVAQQEIIHNSETAATHQQDVSYYQQTPQMPQPDHIIANQYAQNDYIQHTSTPSNVLTQDPYNGQTMYYNQCFNGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00044380;
- 90% Identity
- -
- 80% Identity
- -