Arep012566.2
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421234.1:729196-736435[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.1e-10 4.3e-08 33.4 0.0 1 39 145 184 145 188 0.89 2 5 9.9e-11 3.8e-08 33.6 0.3 2 39 200 237 199 240 0.92 3 5 2e-08 7.8e-06 26.2 0.8 2 30 255 283 254 283 0.95 4 5 1.1e-11 4.2e-09 36.6 0.1 9 45 285 322 285 322 0.97 5 5 1.6e-17 6.2e-15 55.3 0.0 1 41 329 370 329 373 0.94
Sequence Information
- Coding Sequence
- ATGCCCGGGAACGGACCGTTTCAAGTGAAATGCGAACCACCTTCTGACGAAGAAGACAACTGTCCGCAACTATCGCTTATATTCCCTGATACTAAGTCTTCCTCCAACCTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCCGCGACTCCGGTCTGCGTGAAGCAGGAGCCAGTGGACACCCCCGCGCTCACGCTGGAGACCCTTGAATCCAACCCTCATACcactGGAAATTTGATAATGGAGAGACACATGGCGATGTTAAATTCGGCAGACGAGCTCGATTCTGCGAGTTTCACCCCTCTGCTAATCAAAGATGAACCTTCTTCGGAAGGAGAATTCCAACAAGCGAGCAGCGACGAGACCAGCGACGGCGGCCGCGAGGCCGAGCGGGcggagcgcgcggcgcgcggcagcCCCAAGAGCTGGACGCCGCGAGACATGGAGCACGCGCTCGACGCGCTGCGGAACCATCACATGAGCTTGACGAAGGCATCAGCCACATACGGCATTCCATCGACGACCCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAAGAAGGCAGCGCCAAGTCGTGGTCGGAGGCCGACCTGCGCGGAGCCCTGCACGCGCTTCGGGCCGGGGCCATCTCCGCCAACAAGGCTAGCAAGGCGTATGGTATCCCAAGCAGCACCTTGTACAAGATAGCCCGGCGCGAAGGCATCCGTCTGGCGGCGCCCTTCAACGCGGCGCCGGTGTCGTGGCGGCGCGGCGACCTGGCGCGCGCGCTGGCCGCCatccgcgccggcgccgcctccgtgcagcgcgccgccgcgcagTACGGGATACCCACCGTGCTGGCCGCCatccgcgccggcgccgcctccgtgcagcgcgccgccgcgcagTACGGGATACCCACCGGTACTCTGTACGGACGATGTAAAAGGGAGGGCATAGAGCTGTCTCGCTCCAACCCCACGCCCTGGTCCGAAGACGCGATGGGAGAAGCCTTAGAAGCAGTCAGAGTGGGACAAATGTCAATAAATCAAGCGGCTATTCACTACAACCTGCCCTACTCGTCTCTTTACGGAAGGTTCAAGAGATGCAAATATTTAGCTCAGGCCCAGCCAATGGCACAGCAAGAAACTCTCAATAATCCCGAAATGGCGGCTCTACAACAAGACGCATCATACTACCAGCAGACCGCAAATATGCACGAACCAGACCACATCACAGCCCAGAATCAGAGCTATCCACAAAATGACTATATTCAGCATACATTTCCGCACAACAATGTGATAATACAAGACCCGTACGCCGGACAAGCGATGTATTACAACCAGTGTTTTAACGGCATTGCCACTAGCTGA
- Protein Sequence
- MPGNGPFQVKCEPPSDEEDNCPQLSLIFPDTKSSSNLEELAPLAPAGPAATPVCVKQEPVDTPALTLETLESNPHTTGNLIMERHMAMLNSADELDSASFTPLLIKDEPSSEGEFQQASSDETSDGGREAERAERAARGSPKSWTPRDMEHALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLARALAAIRAGAASVQRAAAQYGIPTVLAAIRAGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYLAQAQPMAQQETLNNPEMAALQQDASYYQQTANMHEPDHITAQNQSYPQNDYIQHTFPHNNVIIQDPYAGQAMYYNQCFNGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00143003;
- 90% Identity
- -
- 80% Identity
- -