Amei004851.1
Basic Information
- Insect
- Apis mellifera
- Gene Symbol
- -
- Assembly
- GCA_003254395.2
- Location
- NC:3278206-3289464[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.052 3.1 7.5 1.0 2 22 122 141 121 141 0.94 2 17 0.00074 0.045 13.3 1.7 1 21 147 167 147 168 0.96 3 17 0.00017 0.01 15.4 3.7 1 23 564 587 564 587 0.97 4 17 0.79 48 3.8 0.3 5 23 594 613 593 613 0.94 5 17 0.00034 0.021 14.4 0.9 2 23 620 641 619 641 0.96 6 17 0.38 23 4.8 3.3 2 21 669 688 668 689 0.91 7 17 0.006 0.36 10.5 0.5 1 22 789 810 789 810 0.95 8 17 0.0086 0.52 10.0 0.4 2 23 818 840 817 840 0.88 9 17 0.069 4.2 7.1 4.5 1 23 850 873 850 873 0.95 10 17 0.0038 0.23 11.1 3.4 1 23 920 943 920 943 0.95 11 17 0.01 0.62 9.8 4.9 1 23 954 977 954 977 0.94 12 17 0.0024 0.14 11.8 0.1 1 20 1020 1039 1020 1041 0.94 13 17 0.36 22 4.9 2.4 1 19 1048 1066 1048 1068 0.96 14 17 4.9 3e+02 1.3 3.5 1 19 1080 1098 1080 1103 0.80 15 17 0.00097 0.059 13.0 1.4 1 20 1137 1156 1137 1158 0.95 16 17 0.00041 0.025 14.2 0.4 1 23 1165 1187 1165 1187 0.97 17 17 0.00026 0.016 14.8 0.2 2 23 1198 1220 1197 1220 0.94
Sequence Information
- Coding Sequence
- atggcTCGAGTCTTAGTTTATAACCGTTCTGTTGATGCAATATTTATGGACGTAAACTTGGGAGTCAAGACAAATcttTCTGAACAaggaataataagaataaaagaagaaccGATCGAGAACGATAGCTATGACGATTTATGGTTGAACGAAATTGAAGCCGAGAATGAAAACGAAGCATCAAGATCTGAAGATTGTGAAAGCGAAGAAAgcaaaattgaagataataaaatcgaaaataataaaactacgaatgataaaattgaagatgAAGTTTCGAATgctaattatgaatataaaagttatgtGCCACCTCAAGAATTCGAtcccttaaaaaataatacattgaaTACTCAATATATAACTTGCAGTATTtgtttcgtgaaatttaaCAAGAAAAGTTTTAATCGCCATGTGCGTAGATACTGTAACGGTGactataaatgtaaaaattgtaaggCGGTCTTCAATACTTATCATTCAATCAATCGTCATTTGAGGATAAACggttgtaagaaaaaaattacgacttataaatttttttgtaatttttgtcgTCGAGGGTTTTGGAGAAAGACCTATATCCAATGCCATTTACTTCACGTGcatggaaatgaaataaataatatcgataatactccaattcgagaaattttcaaatcgtcAGAAAGATCAACAAGTGATTTTGATGATGTATTGATCgtgaaaaagataaacaatTCAAATAACGCGTTTCCAAAACGATCAAACAATATGACAGATACatctaaaaaagaattgaacagTAGACCTTCTCCCAAATTAAACGGTTTAAATTGCACGCATTTGAAAAATCAGTGCGATACAGTTTCGAAAAAGCCGAGAAGTTCAATAAATAGTTCGAACCAGTTAAATTATTCATGCGATACATCCTCTAAAAAGACGAAGCAGACCACTCTTAcagattttatttcgttttataaagaaaaatcgaacaaCGATGACGTTATCATAGAGAAAGTTATTGGTGTAAACAATAATTCTGTTATTGATGACATGAGTGAAGCACGTGAGAAATTTGGTGATAACTCCTCGTTGAGCAatacagaaaatattcaaGCGCAAAAGCGTATCCGATCTCGTGCGGTTGACAAAAATAAACCATTCGTTCAGATTCATGTGAATCCCCGCACGATGATGCTCTTATtgaacaatgaaataaaaagtaatttggaAACTTCGTACAATGTACCCTACAATCTTAGGCCATCCGGAGAAAATTCCTATGCAGTACGTAAATTTCGCGATTCAATAAAACAGGATGACACTGCTTCTAACAAAGCGAAACCTtctgttaaaagaaaatatccctGCAATGTATCTACGCGAAGAATGTCcttgcgaaataaaaaattcaaatctgaAATTGTAACTAAAGAATGCAAGATCTATCTAGAAAAATGTGATGAGATGTTGAAACGGAGTAAGATTAAAACGGATAAAGTCAAAAATGTTTCTCAATCTTTAAActtgaaagaagagagagagataaaaaaggaaaagattgagaattccattaaaattgaatcgacAAATGACCTATCTTTGAAGTTTACGTCAAAGGTATTCAAAGccaaaacgaataatttatcaattgttaaaaaagagTCAAATATGTcagaaagtaatattaaaatatcccagaaatcttttcaatgccatgtttgtaaaaaattattctcgttAAAAGAGAATTTGTACGAGCATATGAAATTGTTTCACTCTATTTACATGTCGAGTATATGTAACGCACGCTATACatccattaataaattattgaaacattatttGCGTCAACATATCATGTTTAAACGAAAAGAATGTTGCGTGTGTTACGAGAAATTCGACACACCGGTATTATTGAAACGACACATGATTGTGCATTGCTTAAAAACTATACGATCCAAGAAAGACACTCTACCAGTTGACGTCGAGATAAATTGCAGttcatcgaagaaagaaaataagtgCAAAGGTTGTCACAAACGATTTTGGCTCAATTCGTGTTTGAAAGAACACGAGAAGGTGTGTCGTCGAATAAAAGACCTAATTTGTAAGCAACGTAGGCTTCAAGTAAAACGCTCCCTTTCGTCTCGAAAGGAATCGATTAACTcaaaatttaacattcattcaatttcttcgaaacaaaTATCATCAGAGCAGAAAATGAAGTCTTcaataaattcgattattacGACTTATAGTTCATCTCATGTTCTGCCATCTGCCCCATCCTACTCCGCCACAGCAGCAAGTAAAAAGAGATTAGTTAATGGTATCACTTGGATGAAGGGTTACAAAGTTGAGACAAGTGATAAAACAACATTTCCTTGCGCCATTTGCGGGATACAATTTCAAACGTTTCAGAATTTGTGCATGCACGAGCGTACCTATTCCAAACCGGCCAATAAATCATGCAGCGATTGCGGTACCCTGTTTCCCTCCAAAAGATTGTTACAACTTCATTCGCTCGCGACTCATTCGCCTTCATGCGcggaaaattatcaatttttttgcaaGTTTTGCAATCAaggtttcgttaaaaaaacgaACATTCGAATTCACGAGCGACACTTTCACATGGACCAGGTCCCCAAACCCGTCCGAGTCAACGAGTCCATTTGGAGTTCGTATCCAATGTGTACCACGtgtaatttgttatttgaatCGTACGAGAGATTCATCGAGCATAATATGTATTACTATAATGACCAAGTGTTTGTGTGCACCGTATGTGGTAAATCGTTTCAGGGGATGTACAAGCTTCATCATCATAGCAAGGTGGAACATTATCCGAACgatgtattaaaattgtacgCTTACAAATGTGATATTTGCAGTGAAGGTTTCAATTACGAGTCGCATTTTCACGCGCACAAGTTACATGTTCATCTACCCGATGCGCCGATTATAcagaaaacattaaatatcatGCAAGATCACAGTTACGCTTTGACGAATAACGTTGGCATAAGGACCAAAGTGACGGAAGAACCGATAATATTATCGGCAAAGACGTATACTTGCAGTGTttgcaatttgaattttaccaACGAAGAAGATTTGTCGATGCATAAGATAGAATACTCCATGAACGGTAAATTTCAATGTAGCAAGTGCAATCGAAAATGTGGTAATGGTTCTTTCCTAGCCAAGCACGATAGTTTGAACCATACCGGTTGTGACATTAACATCAGTTTCAAGTGTCGCTTTTGTGGTGAGGTGTTGACAACCAGTACAGCGATGTTGTGCCACGAGAagcattttcatttaaattgcaaCAGTGATTTCAACAATGACGACAGACAGCCAATTCAACCAGTTATGGATAAGAAGATTGATAgcagaaaatttgaaaagtgcGATGGTTTTACGTGTTCGACTTGTAACATGAAGTTTCACAACAACATCAACTTGAAGCAACATTTATTGGAGTATGCCGATATAGGTACATTCATTTGCAACATTTGCCAAAGAAAATTCACCGAGGTAGAACAGTTAGAAGTGCACAAAATCAAACATACCATGTTGAGCAACACTTTGCTGTCTCAACGATGTCCTATATGCAACGAAGGATTTTCTGATCCTGTAAATGTTCGGTCGCACGTAATGCACCTACATCGATACGAAacgttcaattttaatatggaGCATATAGGGACAAAATGA
- Protein Sequence
- MARVLVYNRSVDAIFMDVNLGVKTNLSEQGIIRIKEEPIENDSYDDLWLNEIEAENENEASRSEDCESEESKIEDNKIENNKTTNDKIEDEVSNANYEYKSYVPPQEFDPLKNNTLNTQYITCSICFVKFNKKSFNRHVRRYCNGDYKCKNCKAVFNTYHSINRHLRINGCKKKITTYKFFCNFCRRGFWRKTYIQCHLLHVHGNEINNIDNTPIREIFKSSERSTSDFDDVLIVKKINNSNNAFPKRSNNMTDTSKKELNSRPSPKLNGLNCTHLKNQCDTVSKKPRSSINSSNQLNYSCDTSSKKTKQTTLTDFISFYKEKSNNDDVIIEKVIGVNNNSVIDDMSEAREKFGDNSSLSNTENIQAQKRIRSRAVDKNKPFVQIHVNPRTMMLLLNNEIKSNLETSYNVPYNLRPSGENSYAVRKFRDSIKQDDTASNKAKPSVKRKYPCNVSTRRMSLRNKKFKSEIVTKECKIYLEKCDEMLKRSKIKTDKVKNVSQSLNLKEEREIKKEKIENSIKIESTNDLSLKFTSKVFKAKTNNLSIVKKESNMSESNIKISQKSFQCHVCKKLFSLKENLYEHMKLFHSIYMSSICNARYTSINKLLKHYLRQHIMFKRKECCVCYEKFDTPVLLKRHMIVHCLKTIRSKKDTLPVDVEINCSSSKKENKCKGCHKRFWLNSCLKEHEKVCRRIKDLICKQRRLQVKRSLSSRKESINSKFNIHSISSKQISSEQKMKSSINSIITTYSSSHVLPSAPSYSATAASKKRLVNGITWMKGYKVETSDKTTFPCAICGIQFQTFQNLCMHERTYSKPANKSCSDCGTLFPSKRLLQLHSLATHSPSCAENYQFFCKFCNQGFVKKTNIRIHERHFHMDQVPKPVRVNESIWSSYPMCTTCNLLFESYERFIEHNMYYYNDQVFVCTVCGKSFQGMYKLHHHSKVEHYPNDVLKLYAYKCDICSEGFNYESHFHAHKLHVHLPDAPIIQKTLNIMQDHSYALTNNVGIRTKVTEEPIILSAKTYTCSVCNLNFTNEEDLSMHKIEYSMNGKFQCSKCNRKCGNGSFLAKHDSLNHTGCDINISFKCRFCGEVLTTSTAMLCHEKHFHLNCNSDFNNDDRQPIQPVMDKKIDSRKFEKCDGFTCSTCNMKFHNNINLKQHLLEYADIGTFICNICQRKFTEVEQLEVHKIKHTMLSNTLLSQRCPICNEGFSDPVNVRSHVMHLHRYETFNFNMEHIGTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00142040;
- 90% Identity
- -
- 80% Identity
- -