Alab027717.1
Basic Information
- Insect
- Apis laboriosa
- Gene Symbol
- -
- Assembly
- GCA_014066325.1
- Location
- JACEOM010000017.1:135311-146779[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.036 6.8 8.4 0.6 2 22 122 141 121 141 0.93 2 17 0.001 0.2 13.2 2.1 1 21 147 167 147 168 0.96 3 17 0.00021 0.041 15.4 3.7 1 23 563 586 563 586 0.97 4 17 1 1.9e+02 3.8 0.3 5 23 593 612 592 612 0.94 5 17 0.00028 0.053 15.0 1.0 2 23 619 640 618 640 0.96 6 17 0.48 91 4.8 3.3 2 21 668 687 667 688 0.91 7 17 0.0028 0.54 11.8 1.0 1 22 790 811 790 811 0.96 8 17 0.011 2.1 10.0 0.4 2 23 819 841 818 841 0.88 9 17 0.087 17 7.1 4.5 1 23 851 874 851 874 0.95 10 17 0.0059 1.1 10.8 3.4 1 23 921 944 921 944 0.95 11 17 0.013 2.4 9.8 4.9 1 23 955 978 955 978 0.94 12 17 0.0047 0.9 11.1 0.1 1 20 1021 1040 1021 1042 0.94 13 17 0.043 8.1 8.1 3.1 1 19 1049 1067 1049 1069 0.98 14 17 6.1 1.2e+03 1.3 3.5 1 19 1081 1099 1081 1104 0.80 15 17 0.0012 0.23 13.0 1.4 1 20 1138 1157 1138 1159 0.95 16 17 0.00052 0.098 14.2 0.4 1 23 1166 1188 1166 1188 0.97 17 17 0.00033 0.063 14.8 0.2 2 23 1199 1221 1198 1221 0.94
Sequence Information
- Coding Sequence
- atggcTCGAGTCTTAGTTTATAACCGTCCTGTTGATGCAATATTTATGGACGTAAACTTGGGAGTCAAGACAAATctttCTGAacatggaataataataataaaagaagagcCGATCGAGAATGACAGTCATGACGATTTATGGCTGAACGAAATTAATGCCGAGAATGAAAACGAAACATCAAAATCTGAAGATTATGAAAGCGAAGAAAGCATAACTGAAGATAGTAAAATCGAAGATAACAAAACTGCGAATGATAACATTGAAGATGAAGTTTCGAATgctaattatgaatataaaaaatttgtgccACCTCAAGAATTCAAtcccttaaaaaataatacatcgaACGCTCGATTTATAACTTGCAATATTTGTTTCGTGACATTTAACAAGCAAAGTTATACTCGCCATGTGCGTAGATACTGTAACGGTGACTATAAATGTCAAAAATGCAAGGCCGTTTTCAATACTTATCATTCGATCAAACGTCATTTGAGGATAAAgggttgtaaaaaaaaaattacaaattacagatttctttgtaatttttgtcGTCGAGGGTTTTGGAGAAAGGCCTATATCCAATGCCATTTACTTCACGCgcatagaaatgaaataaataatatcgataaaactcaaattggagaaattttcaaatcgtcAGAAAGATCAACAAATGATCTTGAAGATGTACTGATCGTGGAAAAGATAAACAGTTCAAATAACGTGTTTCCAAAACGGTTAAACAATTTGACAGATACGTTTAAAAAAGAGTTGAACAGTACACCTTCTCCCAAATTGAACGGTTTAAATTGTACGCATTTGAAAAGTCAATGCGATACAGTTTCGAAAATGCCGAGAAGTTTAAGTAATTCGAGCCAGTTAAATTATTCATGCGATACACCCTCTAAAAAGATGAAGCAGACCACTCTTAcagattttatttcgttttataaagGAAAATCGAACAACGATGACGTCATCATAGAGAAAGTCATTggtataaacaataattctgTTATTGATGACACGAGTGAATCACATGAGAAATTTGATGATAACTCCTCGTTGAGGAATACAGAAAACGTTCAAGCGCACAAGCGTACCCGATCTCGTGCGCTTGACAAGAATAAACCATTTGTTCAGATTCATGTGAATCCCCGTACTATGATGCTATTATTGAACAATGAGATAAAAAGTGATCTTGAGAGTCTGGAAACTTCGTACAATGTACCCTACAATCTTAGGCCATCTGGAGAAAATTCCTATGCATTACGTAAATTTCGCGATTCAATGAAGCATGACACTGCTTCTAACAAAGCGAAACGTcccattaaaagaaaatatccctGCAATGTATCTACGCGAAGAATGTCTTTacgaaataaaagtttcaaatctGAAATCGTAATTAAAGAGTGCAAGATCTATCTGGAGAAATGTGATGAGATGTTGAAACGGGGTAAGATTAAATCGGATAAAGTCGAAAATGTTTCTCAATCTATAGActtgaaagaagagagagaaataaaaacggAAAAGATTGAGAATTCTATTAAAACTGAATCGGCAAGTGATCTATCTTTGAAGCTTACGTCAGAGATATTCAAAGCCGGagcgaataatttatcgattgcTAAAAAAGAGTCAAATGTGTCAAGAAGTAAGATATCCCAAAGATCGTTCCAATGCCatgtttgcaaaaaattattctcgttaAAAGAGAATTTGTACGAGCATATGAAATTGTTTCACTCGATTTACATGTCGAGTATATGTAACGCACGCTATACatccattaataaattattaaaacattatttgcgTCAACATATCATGTTTAAGCGAAAAGAATGTTGCGTGTGTTACGAGAAATTCGACACACCGGTATCGTTGAAACGACACATGATTGTGCACTGTTTGAAAACCATACGATCCAAGAAAGACACTCTACCGGTTGACGTCGAGATAAACTGCAGttcatcgaagaaagaaaataagtgCAAAGGTTGTCACAAACGATTTTGGCTCAATTCGTGTTTGAAAGAACACGAGAAGGTGTGTCGTCGAATGAAAGACCTGATCTGTAAACGACGTAGGCTTCAAGCAAAACgctctttttcgtttcgaaaggaaTCGATTGGCTCGAAATTTAATGCGATACAAGcaatttcttcgaaacaagTATCATCAGAGCAGAAAATGAAGCCGATAAATTCGATCACTAAGACTTATAGTCACTCACCTCATGTTCTGCCACCTGTCTCACCCTCCTACTCTGCCACAGCAGCaagcaaaaagaaattagttaACGGTGTCGCTTGGGTGAAGGGTTACAGAGTTGAGACGAGTGATAAAACGACATTTCCCTGCACCATTTGTGGGATACAATTTCAGACGTTTCAGAATTTGTGTATGCACGAGCGTACCTATTCCAAACCTGCCAATAAATCGTGCAGCGATTGCGGTACCCTATTTCCCTCCAAAAGATTGTTACAACTTCATTCGCTCGCGACCCATTCGCCTTCTTGCGCggaaaattatcaattctttTGCAAGTTTTGCAATCAaggtttcgttaaaaaaacgaACATTCGGATTCACGAGCGACACTTCCACATGGACCAGGTTCCCAAACCCGTTCGAGTCAACGAGTCCATTTGGAATTCGTATCCGATGTGTACCACGTGTAATTTGTTATTCGAATCGTACGAGCGATTTATCGAGCATAATATGTATTACTATAATGACCAAATGTTTGTGTGCACCGTATGTGGTAAATCGTTTCAGGGAATGTACAAGCTTCACCATCATAACAAGGTGGAACATTATCCGAACGACGTATTGAAATTGTACGCTTACAAATGTGACATTTGTAGCGAAGGTTTCAATTATGAGTCGCATTTTCACGCGCACAAGTTGCATGTTCATCTACCCGATGCGCCGATTATAcagaaaacattaaatatcatGCAAGACCACAGTTACGCTTTGACGAATAACGTTGGCATAAGGACCAAAGTAACGGAAGAACCGATAATATTGTCAGCAAAGACGTATACTTGCAGtgtttgcaaattaaatttcaccaaCGAAGAAGATTTGTCGATGCACAAGATAGAATACTCCACGAACGGTAAATTTCAATGTAGCAAGTGCAATCGAAAATGTGGTACCAGTTCTTTCCTAGCCAAGCACGATAGTTTGAATCATACCGGTTGTGACATTAACATCAGTTTCAAGTGTCGCTTTTGTGGTGAGGTGTTGACAACCAGTACAGCGATGTTGTGCCACGAAAAGcactttcatttaaattgcAGCAGTGATCTCAACGACAGACAACCAGTTCAACAAGTTATGAATAAGAAGATTGATAGCAAAATTGTTAAACTTGAAAAGTGCGATGGTTTTACGTGTTCGACTTGTAACATGAAGTTTCACAACAACATCAACTTGAAGCAACATTTGTTGGAATATGCCGATATAGGTACATTCATTTGCAACATTTGCCAAAGAAAATTCACCGAAGTGGAACAGTTAGAAGTGCACAAAATCAAACACACTATGTTGAGCAATACTTTGCTGTCGCAACGGTGTCCTATATGCAACGAAGGATTTTCGGATCCTGTGAATGTTCGGTCGCACGTAATGCACTTACATCGATACGAaacgttcaattttaatatggaGCATATAGGGACTAAATGA
- Protein Sequence
- MARVLVYNRPVDAIFMDVNLGVKTNLSEHGIIIIKEEPIENDSHDDLWLNEINAENENETSKSEDYESEESITEDSKIEDNKTANDNIEDEVSNANYEYKKFVPPQEFNPLKNNTSNARFITCNICFVTFNKQSYTRHVRRYCNGDYKCQKCKAVFNTYHSIKRHLRIKGCKKKITNYRFLCNFCRRGFWRKAYIQCHLLHAHRNEINNIDKTQIGEIFKSSERSTNDLEDVLIVEKINSSNNVFPKRLNNLTDTFKKELNSTPSPKLNGLNCTHLKSQCDTVSKMPRSLSNSSQLNYSCDTPSKKMKQTTLTDFISFYKGKSNNDDVIIEKVIGINNNSVIDDTSESHEKFDDNSSLRNTENVQAHKRTRSRALDKNKPFVQIHVNPRTMMLLLNNEIKSDLESLETSYNVPYNLRPSGENSYALRKFRDSMKHDTASNKAKRPIKRKYPCNVSTRRMSLRNKSFKSEIVIKECKIYLEKCDEMLKRGKIKSDKVENVSQSIDLKEEREIKTEKIENSIKTESASDLSLKLTSEIFKAGANNLSIAKKESNVSRSKISQRSFQCHVCKKLFSLKENLYEHMKLFHSIYMSSICNARYTSINKLLKHYLRQHIMFKRKECCVCYEKFDTPVSLKRHMIVHCLKTIRSKKDTLPVDVEINCSSSKKENKCKGCHKRFWLNSCLKEHEKVCRRMKDLICKRRRLQAKRSFSFRKESIGSKFNAIQAISSKQVSSEQKMKPINSITKTYSHSPHVLPPVSPSYSATAASKKKLVNGVAWVKGYRVETSDKTTFPCTICGIQFQTFQNLCMHERTYSKPANKSCSDCGTLFPSKRLLQLHSLATHSPSCAENYQFFCKFCNQGFVKKTNIRIHERHFHMDQVPKPVRVNESIWNSYPMCTTCNLLFESYERFIEHNMYYYNDQMFVCTVCGKSFQGMYKLHHHNKVEHYPNDVLKLYAYKCDICSEGFNYESHFHAHKLHVHLPDAPIIQKTLNIMQDHSYALTNNVGIRTKVTEEPIILSAKTYTCSVCKLNFTNEEDLSMHKIEYSTNGKFQCSKCNRKCGTSSFLAKHDSLNHTGCDINISFKCRFCGEVLTTSTAMLCHEKHFHLNCSSDLNDRQPVQQVMNKKIDSKIVKLEKCDGFTCSTCNMKFHNNINLKQHLLEYADIGTFICNICQRKFTEVEQLEVHKIKHTMLSNTLLSQRCPICNEGFSDPVNVRSHVMHLHRYETFNFNMEHIGTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00142667;
- 90% Identity
- -
- 80% Identity
- -