Amei005283.1
Basic Information
- Insect
- Apis mellifera
- Gene Symbol
- prdm10
- Assembly
- GCA_003254395.2
- Location
- NC:12841261-12846721[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0063 0.38 10.4 0.1 2 23 513 534 512 534 0.93 2 11 0.00046 0.028 14.0 0.3 3 23 548 568 546 568 0.96 3 11 3.4e-05 0.0021 17.5 1.8 1 23 585 607 585 607 0.98 4 11 0.0038 0.23 11.1 2.6 2 23 616 637 615 637 0.96 5 11 0.0001 0.0063 16.0 0.2 1 23 644 666 644 666 0.98 6 11 0.004 0.24 11.0 1.8 1 23 673 695 673 696 0.95 7 11 0.00025 0.015 14.8 1.7 1 23 701 723 701 723 0.98 8 11 1.5e-05 0.00093 18.7 4.1 1 23 729 752 729 752 0.96 9 11 0.0011 0.066 12.8 1.7 1 23 785 808 785 808 0.97 10 11 2.4e-05 0.0015 18.0 2.4 1 23 830 853 830 853 0.97 11 11 0.00098 0.059 13.0 3.4 2 23 890 912 889 912 0.96
Sequence Information
- Coding Sequence
- atggatCTAAGGGGCCCTCCTGAGGGGGCCCCTATTAACTCTTTTGAGATATCTATATCTGACAATTGGCCTACAGATTCTGTTTCTATATCAATGtgtgaacaaaaaaaaatgaataataataaattattatttttaactgtgGAATATGTGGAAGATCCATCACGAGAATATTCTCGTTTATTTCCAACATATGAACAAGTTTCATTTTCTCCTAGAGCTTCATCTCCACTTTCTGATTTTAAACATCGTGTTAGTCCACTTGATCCTAATATGAGTTCAGCTGCTAGATATTCACCCACTCCAGTACAACTTCCACCATCTCCTTTTCATAATTCTGTTGTTGTATTGCAAggttcttcttcatctttaaTATCCTCTGAatcaaatgaaagaataaatattaattatgtttctCAATTGACTCATCCAATTGATACACAAAGTGTACAACAATCTGATAGTTCAACTGACTTTGTTGCCAACGAAAATGAGGAGCAATTGATGTCTAGTGTTAGTAATGAATTGATTCTTATGCAAGAATCTAATTCTGAATTAGAATCAGCTACAGCTCCATTGATGCTAACAGGAATACCAAGTACAGATTTTACATTAAGTAGAGATTTTCTTGTCATGCAAGATGATCAAATGaatgttataaattcatttaagacACAGAATCTTGATGTAGATGATTCTACACATCTTTCATCAACAGcacaaaattcaaataaagaaaataatatagatccCTTAGCTACAACCAATGAgcaagaaattaatgaaattttaatgtcTACTGAAGACAAAAaagattgtgaaaaaaaacatGTCAGACGTTCAAAACGtcgtataaatgataaaaaaaatatttgTTGTAATGAATGTGATGATGTATGTACTGGTGATAATTGTACTTCACATAATGTATGTACAATAGCAGATCAACCAGTACCATCACGTGCTATAGCAACACTGCCAGGATCATATCTttctataaacaaattatgtaATTCTGACATTGTATTGGGTGGATCAGATTATGGAGTGTTTGCAAAACGTTATATACAAAAACGTACTCAATTTGGACCTATAGAGGGTATTTTATACCCTTATGATGGTACaccatttaaaaatgaattgccATTGCTCTATGAaactgaaaataaagaatttttaaaagtagatGTTTCAAATGAAAATGCTTCAAACTGGATGCGATTTGTTAGACCTGCATTAACATATAAAGACCAAAATTTAGTAATTTGTCAACAACGTGATGGTATAGTATTTTTGACTACAAGAAGTATTTTACCAAAGGAAGAACTAAAAGCTGGTCCTAGTACTGATTATGCAATCCGTAGAAATTTAATACCTTTAAAATCTATGcaagaaataaatgatgataaagagCACAAAAGTCAGTTATCTACTTGGTCACGATTAGATGATACTCATTCACGgcgtatgaaaatatttcgtggtagaaatttaaaagagaaagaaaattcgagacAAAATAATTCTAAGGAATGGAAATGTTCTGTTTGTGgtttgatttttagaaaacCACTTTTACTTAATTTACATAGTCTCTTACATGGtccagataaaataaaaactaaaacacAATCTACAATTTGTCCACAGTGTGGATTACagtttcaaaaacaaaaagaattgattaatCATATTTCACAACATGGgagattatctttaaaaaaagaaaaaagattaactTCTTTATCGACATATAAGTGTTCAATATGCTATAAACGTTTTGCAACAAAAGTGCGATTGCAACAACACTATTTAGTGCATGGTGCTGAAGACCAAAAACCACTGCCATgcaatatttgtttcaaaagaTTCATGAATAATTCAGCACTCTCTTGTCATTTAAAAACACACAAAGAAAATAAACAAGTATTTGAATGTCCGATGTGTCGACAATTATTTAGtcaaagtatattattaaaagatcatATTGAAACtcataaaaatgaagatgGCACTTTTAGCTGTCCCTACTgccaaagaatatttattaaatattcgattattcgtaAACATATTAGAGCTCATCATTGTGAAAGAAAACATAAATGTCAAATTTGTGCAAAACGATTTGCTACAGTAGATAAATTACAAATGCATTTACTAAAACATTCTGATCATAGagaATTTCACTGTGCAAATTGtggtaaacaatttaaaagaaaagataaattaaaagaacatatgactaaattacataattcacAAACAGCCACTGATGAACAAATGTCACAAGTAACACAAACTAAAAAGTTTGTTCCAAAGGTAAATCCTAACGATTATAATCGCTTTATTTACAAATGTCATCAATGTTTAGTGGGTTTCAAACGAAGGGGAATGCTTGTCAATCATTTAGCAAAACGACATCCAGATGTTGCACCAGAATCTGTACCAGAATTAAATTTACCAATTTTACGTCAAACGAGAGATTACTATTGTCAATATTGCGATAAGGTCTATAAAAGTAGCAGTAAACGAAAAGcacatattatgaaaaatcatcCAGGAGCTGCTTTACCACCAAGTAATCGACAGAAAGAATCAGATTATTCTGATTTACCAAATCCAACATTTAGTCAAACTGTTGGTAGTATTACAACTACACCTCAGAGTTGTCAATGGTGTCATAAACAATATGCTAGTAAAGCAAAACTCTTACAACATCAACGAAAAAAGCATTCTAATCTAATGGAACCGGCTGATCAGATACCGCGTTCGCGTAATCGACAGTCACATAATCAAAATCAACCTCCAGTACTTATTGAAGATCACTTTGTATTATCTGATTATATTCAAGCATGTGAAAcaaattcagatttttttaaaccgagaataatcaaaatatctgATGATGTTGATCTAATAAGCAATGGATTAGAGATAGTTGGGCAACAATTTGTTCGTATGCGTGACATACGTTGA
- Protein Sequence
- MDLRGPPEGAPINSFEISISDNWPTDSVSISMCEQKKMNNNKLLFLTVEYVEDPSREYSRLFPTYEQVSFSPRASSPLSDFKHRVSPLDPNMSSAARYSPTPVQLPPSPFHNSVVVLQGSSSSLISSESNERININYVSQLTHPIDTQSVQQSDSSTDFVANENEEQLMSSVSNELILMQESNSELESATAPLMLTGIPSTDFTLSRDFLVMQDDQMNVINSFKTQNLDVDDSTHLSSTAQNSNKENNIDPLATTNEQEINEILMSTEDKKDCEKKHVRRSKRRINDKKNICCNECDDVCTGDNCTSHNVCTIADQPVPSRAIATLPGSYLSINKLCNSDIVLGGSDYGVFAKRYIQKRTQFGPIEGILYPYDGTPFKNELPLLYETENKEFLKVDVSNENASNWMRFVRPALTYKDQNLVICQQRDGIVFLTTRSILPKEELKAGPSTDYAIRRNLIPLKSMQEINDDKEHKSQLSTWSRLDDTHSRRMKIFRGRNLKEKENSRQNNSKEWKCSVCGLIFRKPLLLNLHSLLHGPDKIKTKTQSTICPQCGLQFQKQKELINHISQHGRLSLKKEKRLTSLSTYKCSICYKRFATKVRLQQHYLVHGAEDQKPLPCNICFKRFMNNSALSCHLKTHKENKQVFECPMCRQLFSQSILLKDHIETHKNEDGTFSCPYCQRIFIKYSIIRKHIRAHHCERKHKCQICAKRFATVDKLQMHLLKHSDHREFHCANCGKQFKRKDKLKEHMTKLHNSQTATDEQMSQVTQTKKFVPKVNPNDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRQKESDYSDLPNPTFSQTVGSITTTPQSCQWCHKQYASKAKLLQHQRKKHSNLMEPADQIPRSRNRQSHNQNQPPVLIEDHFVLSDYIQACETNSDFFKPRIIKISDDVDLISNGLEIVGQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00232789;
- 90% Identity
- iTF_00983779;
- 80% Identity
- -