Alab001511.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apis laboriosa
Gene Symbol
-
Assembly
GCA_014066325.1
Location
JACEOM010004374.1:8524317-8530784[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0052 0.98 11.0 0.2 1 23 690 712 690 712 0.97
2 11 0.39 74 5.1 0.1 2 23 799 820 799 820 0.95
3 11 0.089 17 7.1 0.3 3 23 998 1018 996 1018 0.95
4 11 6.4 1.2e+03 1.3 1.0 1 11 1029 1039 1029 1045 0.85
5 11 0.00069 0.13 13.7 0.1 1 21 1096 1116 1096 1117 0.95
6 11 0.079 15 7.3 2.0 2 23 1146 1167 1145 1167 0.95
7 11 5.5 1e+03 1.5 0.1 1 23 1186 1208 1186 1208 0.95
8 11 0.0029 0.55 11.8 0.2 1 23 1256 1278 1256 1278 0.97
9 11 0.007 1.3 10.6 3.9 1 19 1744 1762 1744 1764 0.97
10 11 2e-05 0.0038 18.6 0.7 1 23 1954 1977 1954 1977 0.97
11 11 0.17 32 6.3 1.3 1 23 1979 2001 1979 2001 0.97

Sequence Information

Coding Sequence
atgaaaaatagtTCTTATACgttaagaaaaagatttaaaaatgatactaTGGACCAATtgtcaaagaaagaaaataaattacaagttttatataaattgtgtaagccagtttatgtaaatatcataaaattaccaataaataaatcagagataaaaaaatgctgtgaaaaagattcatttataactcaaataaaagatatatcaaaaaatagaaaacgaaaaaCTAAAGATTatgttaaaagaataaattccaaatataatcaattacatCATTTATGTAAATCAAAAACTAAAACTAAATctcaaaatgtattattttctaaagaaacaaaaaataaagataaaacatttcttataaagaatttatcaaAAGACATTAAGCAACCATGCataaaattacacaaaataGATGaagtaatcaataaaatagcaCAAACATTTGcaaaaacaatttcaactAAAGAATGTgcaataaatagaatagattGCATGAAAGAAAGTCAAActgaattaaatacatttattgcaGAATCAgtagaattattatctataaatactgataaaaatgaatatgttaaaaatcaagaaactgaaaatgcaataattaatccttatgtaaataaaattctacaatCAAATGAgtgtaatgaaaataataataataaatcttctgattctgaaattataagaattactagaaaagaaaatttcaaaaagaaacgtaaaaatgatatgaatgatgattatgataataataataacaatgaaaataacaatatacataaaattactttaaataaaataaaaagattgaaaagaaatttaccaGAGAAaacattagaaattaatatagcaCATGAAgatgttaagaaaaaatatatagatgaaaATCCAATGTTGCAATTAGAATCATTAGATGTtactaatgaattatttaatccatcagataaaaaaaatttaaatataaaggaaaatataaatatatcacaacaggaattaactatattaaataaattatctacaaTATATGATTCTGATGATGAAAACAATGATCTTGATCAAAACATACAAGAAgataattccaattttatgcctttagaattaaatcttataagtattatagaaaatgataCTTCTGTAAACACAAAAAATCATGATATTATGACAATTGAAAAaccaattttaaaagataaatatattcaaaaatcaatacaagaatcatttaattctagtagatattttatacaaaaatataaactttttaaagaattaagaatctttttaataaaatttgatgctttgaaaaactttaataataaatattcagctaaagaaattgagaaattgatagaaacatatataaattcttcaacaaattttaatatttcaaaacttcaaaaaaataaaaaatctataaataaaatgtcacttacatttaaaaatgctAATGTTAATTCTGAAGAatctataaatcatatttcaaatttaaacatttgtgaaactgcaaataaaaatatttgcataactgccaaagaaatacaaaacataattgaaccattattaatttttccaaaaaaatcatctttaaattcaattaataaagaaaaagtaaaaaaagaggaaaatttagaaattcaaaaaacttgtcataatttaacaaaaatatttgaaaacaaatctgaagaaagatttaagcaaaatagaattaataattcagaaCAAATATCAGATTTACTTTCGATTACTAAACCTATATTATCTTCTTCACATGAGTCTATTAATGAAACTTCTAACTTATCaaatgtatttgaaaatactgttaatattaaaaagtcaaTAAATATGTTAGATATAAATTCTGTAACAAAATCCACTAATGAAATGTTATgcttaaaggaaaaaatagtaaatacttCTCTAtgtaaacaaaaatcaatttcagaaAACATGAAAGTTAATACACATATTAAAGATACtacaaaaaatgttttaacttATTACTCTTCCATGATATCtccaataaaagataaaaaacttaaagataagaaagagactaaaatttctacttataaatgtattgtttgtgatcttaattttaaagaatattctgATTTGCAGtcacatttaattattcatacacAAAAGCAAAGTAATACTTTATCAAGTatgtcgaaaaatattaatgaatcgtCTGAAAAATCTCAAGAAATCATAACTTGTTTTTCAGAAATAGAAATGTTAGAATCACCAAAAATATCTGAACAAAAAAATACGGAATATGTGTCAAAATTTGTTActagtgataataataaacaatcaaagaaaaaagatataacaaaaaatttaataaataaagagaaaaagaaaaagattgaatgtattaataattcaaatgaatgtaatatttgtttacaaGATTTTCTAACAAAAACTGATTTGGCAgctcatatttatttacatacagAAAATGAATTGCAACAAGCTTATAAAGTtgcaaaacaaaaatcaaatgagaatgaaaagacaaaaaataaagaatttaaacaaagcaaaactaaaaaatttattgatagcAAAAGTAGTATAATATCTAAcacaattcaaataaatgaaaaaattagcaGTAAAGAACTGTTACGTGTACAAGAATCAGATAAatcagataaattaattagagaaaattctaaaattaaagatataaaattcactgctttcaaagaaaatgatatgcaaaatatagaattaccaatgaaattagataaagagaaaataaataaaatagaatgtagcaaaaaatcatttacaatATGTGAATGTCACAATAAACCAggaatcaatgaaaattgCTTACAAATTGAAATAGTTCTTCTTTGTCACACTTGTAGAGTGTTATATAGAAGTATAAAATGTTTTGAGACTCATTATCGTCTTCCTGAATATGCAGACTGTAATCAGAATTGCTTAAACAATGGTCGTTctccaaatttattttgtgcTACTTGCggtatgatatttaattcagTTCAAGATGTACGTCATCATTTAGAAATACACgctcgttttaaaaaaaattctacaatgGAATTTCGATGCAACATttgtaaagttatattttgtgGAATAGGAACtcttttctatattcattGGTCAAAACATGCAAGAGATTCTTTATGGATGGCTAGTGAGCAATCATTTCCAaagaattctataataaactcaaaactaaaaaaaaattcttcaatgaATTTAAGTATATCTACAGAAGATTATATTCAAGTTGCAGAATATGTTTGTAACAATTGCAAATTACCTTTTATTAATGAAGATGATTTAAAAGaacatattcaaaaatgtaataaatctaatttagttaaaaatacAACTACTATAGAGAACTCTAATAACATTGTTCAGACACATTTGACAATAAAAGTAACTTGTAATTTATGTGATaactcttttaaaaaaaatgaattttataagcaCATAAAaagtaaacataattttagtGATCCTCAATTTCTTTGTGTATCACTTGCAACTGcaaaattagtatttatttgCAGTATTTGTATGGTAAtaactgaaaatttttatgattttgagGATCATTGGTTGAcgcataatataattcatgtaAATTTTACTTGTATACATTGCAAtactaaatatcataatagtttaaattcttttatagaaCATGCtaaaaaacataaagaaaGTTATAATATGTTGTCCTGTATAGTGAATTATgaaaaagcaaaatttatttgtgaattttgtaatattggtTTTGAGTCTTCTCAAAATATGCAAGAACATATTACTATTCATaaacagatatattttaaaactgatCAAGTtacaaatcataataattctgcattattatcaaaaaaaaatcatacttccaattttacagaaatatcAACTGTTGAGAAACAGATAGAGAAAACATCACAAATGAAAActcaaacaataaaaaaaataaataagatttgttCAACAAAATCTGGTATAGACAATGATACTGAGAAATTAATCAAGATACTAGAAGGAAATGAAGATGATTCTGAGATAGTAATAGATTTGATAAACCAATCAGAATcattaaatgatgaaaaaagtaaggaaaaagaaattacttcTAATACTATATTAGAAACGTCTTGTATTAATCAAACTAatataatgttgaaaaataatataactaaatcACCAGTAACAAGTCTAAATGTTCAAACATCttcacattttataaatttagaatcttctccaaatattttaaattcacgaACATTTAATTCAAACGTTAAATGTACGAATGTTTTGCAAGATTCAgatatatcttcaaaaaagattaataatgataataatcaaCTTTTGCAAGATTCAgatatatcttcaaaaaagattaataataatgataataatcaacttgatccaaaaattaaaacaacagATGATCAATTAATCATAAAGAATATACAACCTATTCTTCAGAATAATGAACCTCAGGATATAGTTTCAACTACAAAAGAATTAGAATCAGTtttgaaaacattattaaaatcagaggaagaagaaattccaTCAAGAAAAGGATTCTTAAGAGTGAAAACTCTTGCAGAGCTTAGAGATCctgtaaaattaaacaaacttGATGATCATGTTATTGAAAATGCTGGTGATTCtatcaatcattttaaaagtcataatattttgaatgaaaatgataaacaacataaaattaaagaaaaagacttatcttcaaaacaatttatagATTTCACTTCGAACAAATTTGAGAAATCATTATACGAAAAAACAACGcaatctcaaaaaaattcaaatatattaccaTTGTCTTtatctaattcaaattattcacaattaaATGTCTCTGAAATTCAACCATATAATacagtaataaataatcaacaaCAGCAGCGATTGCAAACGaacataaatcaaaataaatattcatcttcTCCACAAGAAGTAATATCAGAAGTAACATCAGTATACCATAAAAATTTACCAGCTTGCAATATTGCTCGAACGACTACAACTATACCACATTctattttgaagaataatgatggatctaataaaattgtaaaaactattaatgTACAGCAAAATGTAAATACAGCACATCCAACGTCttcttctattaataaaaatgatcaaatgtcttctttcaataatacaattaattcaaatcaatataaatgtcATTATTGTGATTTTTGTACAGATGATTTATCAAACTtgttaaaacataatttaccAGGTAATCATATTAGCTgtgaaaaacaatatttgcaACATAATGAACAGAATAAAAAACTCAAAGAAGTTGATAATTTACAAACAAAGACAATTATGCAAAACCAAAATtcaagttataaacaatttcaacaatcaaatataaatcaatcaggaattaaatatacttCTTTGTCTACATGTTATCAATATCCTTATATTGCTACAAATAATTCAGATAAAAGTACTCCAATGTTTAAGCAAAATCAGCCAATAATAACTAATCAATCAATAACAGAAAAtgtttcttctctttattataaaaatttaaatcataacgCTGGTGGAATATCAATAGTGATGAATCAAGCTGCTCCTGCTATACAGAACATACCAACAATAGATTTTATACAACAACCAACACAGCaacaaatatatcaatcaCAAGTTTACAATGAACCAACAACAATTATAGATGCTCAATATATGCAGCAATCACAGaatttagtaaatttttctGATGTTTACCAAATGACGAGCAATCAGTATGAAGTAACTAAGCCAAATGTTACAACTTATGAAATTCGATACATATGTTCTTATTgtacgaaaaaatttatttctgaagATTTATTGCAGTtgcatatgaatatttttcataattttgtatgtaatatttgcaatttgcgtttatataatttcaatgattttaatcttcataaaattaaacatacgatatattaa
Protein Sequence
MKNSSYTLRKRFKNDTMDQLSKKENKLQVLYKLCKPVYVNIIKLPINKSEIKKCCEKDSFITQIKDISKNRKRKTKDYVKRINSKYNQLHHLCKSKTKTKSQNVLFSKETKNKDKTFLIKNLSKDIKQPCIKLHKIDEVINKIAQTFAKTISTKECAINRIDCMKESQTELNTFIAESVELLSINTDKNEYVKNQETENAIINPYVNKILQSNECNENNNNKSSDSEIIRITRKENFKKKRKNDMNDDYDNNNNNENNNIHKITLNKIKRLKRNLPEKTLEINIAHEDVKKKYIDENPMLQLESLDVTNELFNPSDKKNLNIKENINISQQELTILNKLSTIYDSDDENNDLDQNIQEDNSNFMPLELNLISIIENDTSVNTKNHDIMTIEKPILKDKYIQKSIQESFNSSRYFIQKYKLFKELRIFLIKFDALKNFNNKYSAKEIEKLIETYINSSTNFNISKLQKNKKSINKMSLTFKNANVNSEESINHISNLNICETANKNICITAKEIQNIIEPLLIFPKKSSLNSINKEKVKKEENLEIQKTCHNLTKIFENKSEERFKQNRINNSEQISDLLSITKPILSSSHESINETSNLSNVFENTVNIKKSINMLDINSVTKSTNEMLCLKEKIVNTSLCKQKSISENMKVNTHIKDTTKNVLTYYSSMISPIKDKKLKDKKETKISTYKCIVCDLNFKEYSDLQSHLIIHTQKQSNTLSSMSKNINESSEKSQEIITCFSEIEMLESPKISEQKNTEYVSKFVTSDNNKQSKKKDITKNLINKEKKKKIECINNSNECNICLQDFLTKTDLAAHIYLHTENELQQAYKVAKQKSNENEKTKNKEFKQSKTKKFIDSKSSIISNTIQINEKISSKELLRVQESDKSDKLIRENSKIKDIKFTAFKENDMQNIELPMKLDKEKINKIECSKKSFTICECHNKPGINENCLQIEIVLLCHTCRVLYRSIKCFETHYRLPEYADCNQNCLNNGRSPNLFCATCGMIFNSVQDVRHHLEIHARFKKNSTMEFRCNICKVIFCGIGTLFYIHWSKHARDSLWMASEQSFPKNSIINSKLKKNSSMNLSISTEDYIQVAEYVCNNCKLPFINEDDLKEHIQKCNKSNLVKNTTTIENSNNIVQTHLTIKVTCNLCDNSFKKNEFYKHIKSKHNFSDPQFLCVSLATAKLVFICSICMVITENFYDFEDHWLTHNIIHVNFTCIHCNTKYHNSLNSFIEHAKKHKESYNMLSCIVNYEKAKFICEFCNIGFESSQNMQEHITIHKQIYFKTDQVTNHNNSALLSKKNHTSNFTEISTVEKQIEKTSQMKTQTIKKINKICSTKSGIDNDTEKLIKILEGNEDDSEIVIDLINQSESLNDEKSKEKEITSNTILETSCINQTNIMLKNNITKSPVTSLNVQTSSHFINLESSPNILNSRTFNSNVKCTNVLQDSDISSKKINNDNNQLLQDSDISSKKINNNDNNQLDPKIKTTDDQLIIKNIQPILQNNEPQDIVSTTKELESVLKTLLKSEEEEIPSRKGFLRVKTLAELRDPVKLNKLDDHVIENAGDSINHFKSHNILNENDKQHKIKEKDLSSKQFIDFTSNKFEKSLYEKTTQSQKNSNILPLSLSNSNYSQLNVSEIQPYNTVINNQQQQRLQTNINQNKYSSSPQEVISEVTSVYHKNLPACNIARTTTTIPHSILKNNDGSNKIVKTINVQQNVNTAHPTSSSINKNDQMSSFNNTINSNQYKCHYCDFCTDDLSNLLKHNLPGNHISCEKQYLQHNEQNKKLKEVDNLQTKTIMQNQNSSYKQFQQSNINQSGIKYTSLSTCYQYPYIATNNSDKSTPMFKQNQPIITNQSITENVSSLYYKNLNHNAGGISIVMNQAAPAIQNIPTIDFIQQPTQQQIYQSQVYNEPTTIIDAQYMQQSQNLVNFSDVYQMTSNQYEVTKPNVTTYEIRYICSYCTKKFISEDLLQLHMNIFHNFVCNICNLRLYNFNDFNLHKIKHTIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00141462;
90% Identity
iTF_00141462;
80% Identity
-