Basic Information

Insect: Apis laboriosa
Gene Symbol: -
Assembly: GCA_014066325.1
Location: JACEOM010004374.1:5831460-5834769[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0083 1.6 10.4 0.2 3 23 505 527 504 527 0.94

2 10 0.0061 1.2 10.8 0.9 1 23 533 557 533 557 0.98

3 10 0.00019 0.035 15.6 0.2 1 23 563 587 563 587 0.97

4 10 0.00049 0.093 14.2 0.4 3 23 595 617 594 617 0.92

5 10 0.0065 1.2 10.7 3.9 1 21 624 646 624 648 0.94

6 10 6.8e-05 0.013 16.9 0.4 2 23 656 679 655 679 0.95

7 10 2.7e-05 0.0052 18.2 1.8 1 23 685 709 685 709 0.93

8 10 4.1e-05 0.0078 17.6 0.6 1 23 715 739 715 739 0.95

9 10 0.00021 0.041 15.4 2.8 1 23 745 767 745 767 0.99

10 10 0.00012 0.022 16.2 1.0 1 23 856 881 856 881 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0083	1.6	10.4	0.2	3	23	505	527	504	527	0.94
2	10	0.0061	1.2	10.8	0.9	1	23	533	557	533	557	0.98
3	10	0.00019	0.035	15.6	0.2	1	23	563	587	563	587	0.97
4	10	0.00049	0.093	14.2	0.4	3	23	595	617	594	617	0.92
5	10	0.0065	1.2	10.7	3.9	1	21	624	646	624	648	0.94
6	10	6.8e-05	0.013	16.9	0.4	2	23	656	679	655	679	0.95
7	10	2.7e-05	0.0052	18.2	1.8	1	23	685	709	685	709	0.93
8	10	4.1e-05	0.0078	17.6	0.6	1	23	715	739	715	739	0.95
9	10	0.00021	0.041	15.4	2.8	1	23	745	767	745	767	0.99
10	10	0.00012	0.022	16.2	1.0	1	23	856	881	856	881	0.96

Sequence Information

Coding Sequence: ATGAGCTACAAGATTTCCTTCGATGGCGGCGTTGTTGCTGTGTGTGAACCCCTACAGAGCTGGCTACGGGGCAGTCAAATGTCTCGTAAAGGAACTCCCTCCGCTTGCAAGTCAAAACAAATCCCGCGAATCTTTCGTAATCGACGAGGTTTGTGTTCGGTTCGCGGTTGGGCGCACGGAGAGGTTGGCATTGTGGGTGGATCGGTAGGTTACAACCAATTAAATTTGCTACCCGCTTCACCGGATGAGGACAAAAGAgaggaaacaaataaaaaagaaaaacagataACGAGGAGTGACGACGAGAGTGTACAGTATCACGAAAGAGAGTGGATTGAAAATAACCAAGTGACGAATAGTGTTACAGGCGAATCGAACGTTGATGTGATCGGTAAAGCTGCCGATGTCGAGACTGTAGCTGATATTGAGAAATGGTTAAAAACGCGGACGGAATCCGTGTCGAGCATGGACCTCGACGCGATCAAATCTGGAGTCGAGGAGGGCGTCGACCGATACCTGGGCGAGGAACTCCAGCACGCTTTTCTGGAAAAGGACCCTGACGGATTATCAATCGACATCGATTTGTCTGACAAGAAACTCAATTTAGGTTATGATCCTTTACTTCATGAGCTCCAAAATGAGAAGTTACTCGATGAAAAAGATAGCTTTATACTACCAGAATTTCAATTGGATCATTTAGATCCATTGGCGTTATCTCCCGATGATATGATGGTTGCCGGTGAAATTTTACCGTCAACGAGTGCTCAACCTACTTTAAGTGTCCCTAACAGAGATGACGAAGAAATATGTACAGAGACTGAACAAACTTCGCTTATGAAGAAAGCTATGATTCCAGATAATCaagaattgcaaaataaatctaCACAAGTTGTTGTAGatgattttcataatataaataacgtgaataaagaaattgaattgcaAAAAGATAATAGCTTGTGTAATGATACTACGAATCTCTATGTACAAGATCTCAATTCAGAAAATACTATACATGAATTGACAGATACAAAATTGGTTGATGGTGATTCTGAAAATGCTATaattgaacaattaaaaacaaaagctAAAGTAAAATTAGAACCACGTATTATtaagaaacgtaaaaaaatatcggaaacaatagaaaagaaattagacaatgaaataaaaatatctgaagAAGATGTTGTAGATACTGAAGATAGTACAATGGCTGTTGTAGCTATATCAacagataaaatttcaaatatgacacaaattgttataaatacagGTACTGAAGAACAGATTTATCAAGGAAAAACTTCTGAACTTATAGAAGCTACaggaaattttccaaaattaccaaaaattgaaacatcaACTGTGTGGAATGGAACAATGGAACATAGTACAGAAAATCCTAGTAATCAACATGAAATGGTGATATCTAATGCTTTAGAAGAATTAGGTATTACGGATGATAATCTACAACCAATATCTGTgaacgaaaatggaaaaatatggcTTTGTCCACGTGATGATTGCAATAGACAATTTAGTAAACTTTATGCTCTAAAAGGCCATTTACTAGCACACTATGGTGTAAGACCTTTCAAGtgtgATTTTGAAGGATGTGCTTGGGCattttattcagaatttaaaCTCAAAAGACATAAAGAAACACATTTGAAACGTAAAGATTATGTTTGCGAGGTAGAAGGTTGTAATCGTCGATTtactacaatttataatttatggagTCATGCAAAATTGCATAGTCGcccaaatagaatattatgtcAAGTACCAGACTGCCAAGAAAAGTTTCAGACAAAAAGAGCCTTGGAACTGCATATGAAGACTCACGATCAAAGTCATGCTCCATATATTTGTAAACATGAAGGATGTGGCAAAAGGTATTATAGTAGTAATGCTTTAACGTCGCATCAAAGATGCCATAGTTATAAAGAAGTAGATGTAAAATGCTCGTGGCCAGGTTGCGGTAAAGTATTTGATAAGCCTTGTAGGCTAAAAGCACACATACGTTCGCACACTGGCTGTAAACCCTATCTTTGTACATTTCAAGGTTGCCAATGGGCATTTTCTTCCTctagtaaattaaaaagacaTCAAAAGAAACACACTAATGAACGGAAATTTGTATGTGATGTTCCTTCTTGTGGGAAAGCATTTATGAGATCAGAACATCTTAAGGAACATAGATTAACGCATAAAGAAGgaagatattttcaatgttGTATATGTAATGCGAAATTTTCGGCAAAAAGTAGTTTATATGTTCATATAAAGAAGCATCaagttaaagaagaaatagagaCAAATACACATGATAACATCAATAGTCAAAAACGGAGCAAAGTGAAAGATATACAATGTTCCAGGGTAAATCCGGTTGTGAAATCAAAGAGAAAGTCAATAGATCTGAATATAAATGTAGCTTGCCTGAACAcatctataataaaagaaaaaactgaacataataatacaataattcagGATAgtaatgaaaatcaaattaaaaacgatACAGTGCCTCCACGAGATCAATCTAAGACTTTATATCATTGTCCAGTTGAATCTTGTACACGTTCGTATTCTACGAAAGCTACGCTTAGAGCACATATGTTAAAGATACATGGTACTCGTGTTGAAGAGTGCGATAAAACAACTGGTAAAATATCTGGAGATTCTGTGTGTAATattgattacattttatatactgCTCCTTCGGTATCAAAACCTACAGAACAAATGATAATGGTAGCACCTTATGATGCTGTTATTTTCAGTACTTCATCGAAAACAGATCGTTCTCTTCCTGAACCAGAACCACCACctcttaataatatagtaaaaacaTCGGAACcttcttcaaatattactACACATAAACAATTATCTAATCaacatatgaaaaaagatcAAGGATCTGCACGAACTGATTTAACTTTTTCCGACGTGTGGAAATTAAAAGCAAACGGTGCTGTGTTAGATTCGGTTGTCGGATCATCCGATGTTGTAGTAGGTACAAGTGATTTAGAAGAAGGTTTATTGCTCACAGAGGAATTGCCTTCAATGTATTATCAAGATGATGTAGTAGGAACAGAGTATCAGGTACTATTACTTGATTCAGTACCATCtgaaaatactataaatcTGCGAGAACTTGAATAA
Protein Sequence: MSYKISFDGGVVAVCEPLQSWLRGSQMSRKGTPSACKSKQIPRIFRNRRGLCSVRGWAHGEVGIVGGSVGYNQLNLLPASPDEDKREETNKKEKQITRSDDESVQYHEREWIENNQVTNSVTGESNVDVIGKAADVETVADIEKWLKTRTESVSSMDLDAIKSGVEEGVDRYLGEELQHAFLEKDPDGLSIDIDLSDKKLNLGYDPLLHELQNEKLLDEKDSFILPEFQLDHLDPLALSPDDMMVAGEILPSTSAQPTLSVPNRDDEEICTETEQTSLMKKAMIPDNQELQNKSTQVVVDDFHNINNVNKEIELQKDNSLCNDTTNLYVQDLNSENTIHELTDTKLVDGDSENAIIEQLKTKAKVKLEPRIIKKRKKISETIEKKLDNEIKISEEDVVDTEDSTMAVVAISTDKISNMTQIVINTGTEEQIYQGKTSELIEATGNFPKLPKIETSTVWNGTMEHSTENPSNQHEMVISNALEELGITDDNLQPISVNENGKIWLCPRDDCNRQFSKLYALKGHLLAHYGVRPFKCDFEGCAWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTIYNLWSHAKLHSRPNRILCQVPDCQEKFQTKRALELHMKTHDQSHAPYICKHEGCGKRYYSSNALTSHQRCHSYKEVDVKCSWPGCGKVFDKPCRLKAHIRSHTGCKPYLCTFQGCQWAFSSSSKLKRHQKKHTNERKFVCDVPSCGKAFMRSEHLKEHRLTHKEGRYFQCCICNAKFSAKSSLYVHIKKHQVKEEIETNTHDNINSQKRSKVKDIQCSRVNPVVKSKRKSIDLNINVACLNTSIIKEKTEHNNTIIQDSNENQIKNDTVPPRDQSKTLYHCPVESCTRSYSTKATLRAHMLKIHGTRVEECDKTTGKISGDSVCNIDYILYTAPSVSKPTEQMIMVAPYDAVIFSTSSKTDRSLPEPEPPPLNNIVKTSEPSSNITTHKQLSNQHMKKDQGSARTDLTFSDVWKLKANGAVLDSVVGSSDVVVGTSDLEEGLLLTEELPSMYYQDDVVGTEYQVLLLDSVPSENTINLRELE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00761152;
90% Identity: iTF_00684954;
80% Identity: iTF_00141379;