Alab032458.1
Basic Information
- Insect
- Apis laboriosa
- Gene Symbol
- -
- Assembly
- GCA_014066325.1
- Location
- JACEOM010000240.1:2913708-2921861[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.54 1e+02 4.6 5.6 2 23 240 262 239 262 0.96 2 21 0.035 6.6 8.4 2.0 1 23 312 334 312 334 0.97 3 21 0.28 53 5.6 1.4 1 23 383 405 383 405 0.98 4 21 0.028 5.4 8.7 0.2 1 20 460 479 460 481 0.93 5 21 3.6 6.8e+02 2.1 2.5 1 20 493 512 493 516 0.73 6 21 2.3e-05 0.0044 18.4 2.8 1 23 521 543 521 543 0.98 7 21 0.00023 0.043 15.3 0.3 1 23 591 613 591 613 0.97 8 21 0.00058 0.11 14.0 0.1 1 23 619 641 619 641 0.97 9 21 1.9e-06 0.00036 21.8 1.7 3 23 686 707 685 707 0.96 10 21 0.19 36 6.1 0.8 1 14 714 727 714 737 0.81 11 21 0.0035 0.66 11.6 0.9 2 23 746 767 745 768 0.94 12 21 0.00087 0.17 13.4 0.3 1 23 773 795 773 795 0.96 13 21 0.071 14 7.4 0.4 1 20 851 870 851 870 0.97 14 21 0.00033 0.062 14.8 0.1 1 23 889 911 889 911 0.98 15 21 0.0002 0.039 15.4 0.5 1 23 925 947 925 947 0.97 16 21 6.6e-05 0.013 17.0 2.7 3 23 964 985 963 985 0.95 17 21 0.0063 1.2 10.7 1.5 2 23 1038 1060 1037 1060 0.93 18 21 0.0088 1.7 10.3 0.3 3 23 1089 1110 1087 1110 0.92 19 21 0.0092 1.7 10.2 0.7 1 23 1119 1143 1119 1143 0.95 20 21 0.0054 1 11.0 1.4 1 23 1148 1171 1148 1171 0.97 21 21 0.1 20 6.9 0.7 2 23 1201 1223 1201 1223 0.94
Sequence Information
- Coding Sequence
- ATGGACGAAGTGATAGAGTTACAAAATATGGAAAACGTATGCAGGCTCTGCCTTTCCACCGACGAGCCAAAATCGTCGGTGTTCGAAGTGGAAGACTCTCCGGTATCGTTGGCCAATAAAATACAAGCGTGTTTGTCGATTCAGATTTTAACGACGGACAAATTATCGACGAAAATATGCGcgcaatgtattaaaaatgtgaATCAGTGGCATAATTATAAGGAAGTATGCCTACGTTCCCAAGATAAATTGCAACAATGGTTGGAACAGAATTTACAATCAAGCCCGATGgTTGTAACAATTAAAGATGAACCTGTTGACTTGGACTTTTGTGAGGACAACATTGAAGTTATATCCGAATCTAATGATTCAGATTTGGAAGCTACTAATCTTGAAGAGAGTATGAATTCTTTAACGAACAATGTCCAAGTAGAATTAACAgatgatgaaattaattttgagaaaaaccAATCAACTTTAACAAAAGATGTggatataagtataaaatctGAACCACAGGATTATGACACAGATTGTACTATAGAGATAGAATCTGTAACTGGTAGTGAGCTTGTTTTGAATCCTCTTTCAAACACAGAGGATAGGATTATGGAGGCTGATTCTACTCAAAAATCCAATGCATCCACATCAGCAAGTAAGAAAAAAGCCAGAAGAGGCCCACATACCCACTTTAGAGGTGCACgtgttttcaaacaaaaatgcGTACATTGTCAAATTAATCTTCActctaaatattcttatacaaAGCACATGGAAAGATTTCACAGTGATAAACAAAATGGCACTAATCAAAAATCAGAATTGGAAAACGAAGAAGAGCTTGTTGAAGATTTAGAAGATGAATTAATGAGCATGGAAAAAGATGCTCCATTAACGCAAGTGCAACAAAACATTATTAGTCAATTGAAAACTTTCATGTGTTATTCTTGCGAACAAACTTTCAACGATCGTAGAAGTACACTTTCCCATATTCGTCAACATATGCCTGATTTAAGGCCATACACGTGTATTGCGTGTTTGACAGAATTCCCAGATCGCTCGATGTATAAACAACATTGTAAAATGTCATTCGAATGTGCGATGAAGATTGCACTCGTTATACCGAATGAAGgtgaagagaaatatttcactTGTAATATGTGTTTACGTCCTATGCAGAATAGGAAACAGTTGCTTAGTCATTTATCAAAACACTCGGATAAACAATACGAGGAATTAATATCTCCTACACGATCTCCTCCTAAACTAAAACCAATAACTCCCTTACCATCTccaaaacaagaaataatgaaGGAGCCACACaatgaaagtttaaatatacCACATCCTTACAAAAACGGCGATCCTGCGCACAATCATATATGTGATTTGTGCGGTATGATTTACAGGTACAAACCTAATATGCTAAAGCACAGAGATCTTTGTCAACGTTTATCGTCTGAGGTTAGAACGTCCTACAAATGTGTTCATTGTGGCATGACGTATCTCGTGTTTAGAAAGTTTCATAGTCATATCACGGCAgatcataaaaagaaagagttcACTTGCTCTGAATGCAACAAAAAATTCAGATCTCCTAGCGATTTCTTAGAGCATCATGAGATGCATCGAATGGCGCGTAATCAGAAACAACCTCTTCAATTGAAAAGCGATTTAATGAAGCATAAACAGAATTTATCGACGTCGTTCAAAGACTGGGATAAATTCGAAGCTGAAATGAACGCAAATCAATTATCTGATAACAATCAATACAGTTGTGCACTGTGCAATCTGGAATTCTCAACTAGAGCTGAATTAACGGAACACAGGAATCTTCATTTGAAAGTGAAAATCTATTCTTGTGTTATCTGTCGTAGCATGTTCAGTAGTGCAGGTGCTTTGGAAATTCACATGAAGGATCATGGTATAGAAGACCCGAATGAgagaaatgcaaatatttcgtGTGTAGAATACGGTACCGTGGAAGATGATTCACGAGATTCAAACTCAATGAATTTAAGTGCTATCTCGGATCCAGGgccaaaacataataattgtaaaaaatgcgGAAGACAATTCTCAAATACTGCGAATCTCAAGAGACATATAAGGAACATTCATCCGATCGAAAAACCTCCTTACAATTGTTCTCATTGTTGGCTATCATTTAAGAGCAAAGAAATCCGAGATCAGCACATTACATCCGCACATTCAAAAGCTTCGAAAACTATGCTTCGATGTCCTCAATGTCCACAGACATTTGTCTTTGAAGCCAATTTAGatcttcatttcaaaaatcatcatAAAGATTGTCGTTTCAAATGCGATATTTGCggtaaagaatttttgaaggaAGGCTCGTTGAAGATTCATAGAAGTTGGCACAATAGAGAAAATTATGGACAgagtttgaaatttatgaagaaaGAGGATCAGAAACCTTTGGTAGAacctaaaaaagaagaatcattCAATACGAACGTTAGTGGTCGGCCGGCTAGAGCACGAAAATCCTATCCGAATTCATCTCCGACAAAACCTAATGGCAATTTCCAATGTCAAGTTTGCAGTGATAAGTTTAATGATGTAACAGAATTGAGAAAACATTTATGGGATGTGCATTGTGCTCGTAACAAAAGCGAGAAAAGCTTTTCAGGTGATGAATTCCAATGCGAACTTTGTACGAATATTTTCCCTGATAAGGAGACGTTGAACGTACATATACAATGGCACAAGGCTCAACCCATCTTGAGTGACATTCGAAAGACCAATTTCCCTTGTGATATCTGTGGAAAACTTTACAGTTCCAAAAAGGTATTGGCGAGACACAAAAAACTTCATAAAGCGAGCTCCGTGGCTATTAGCAACTTTTCCAGCAATCAGCCTTTATGCACAATTTGTCATAAAGTATTTAACAGTAATCAGTCGTTACAGCGTCACAGGCTTAATTTGCACAGCAATATTTTCTCTCAACGACCTCAAACACAACAGTACAATAATACGAGAAGAATGTCTCAAGAAGAATCAaaacctaaaaaaataaaattagaagaagaagataaaaaaataccatTTGCTATGGATGCCATGAGCGCAGGCAGAAAGTCGGTAATGTGTCACGGctgtaaaaaattcttccctAATATGAGTGTACTGTATAAACATAAACAATTGGTACATAACAAATCTCACATGATAAGGAACATCGCGAAATCATTCACAATGGAATGTGTACCATTGCATTGCAATGATGGAAAAGTCGCATGCAACATttgctataaaaaattctccGGTATACCGAATCTCCGTCAGCATTTCACTGTGAAACACAAGAATGACCGGCCCAAATATAAGTATGCTTGCTCTATAGACGGTTGCAAGCTCACGTTCCCTACACAATTGACCTTAAAGCATCACGAATTATCGCATACAGTCACTATGTTCAGCTGCTCCTTGTGCAATAGACACGTGTTTAATAGAGCGGCTATGACGAATCATATGCTGACAGTGCACAACACCGTCTACGACGCCGAGAAGAACAAGAATTTCCATAGAGAGATGGATTTGAGTAGTTACGTGGTGGAAGGTGCGGTAGATGCTACTTGCCCCCGATGTAAAGTGAAGTATCCCAACAACAAGGCTATGAagattcattatttcaaaattcacgaGGGCACGAATCAGTag
- Protein Sequence
- MDEVIELQNMENVCRLCLSTDEPKSSVFEVEDSPVSLANKIQACLSIQILTTDKLSTKICAQCIKNVNQWHNYKEVCLRSQDKLQQWLEQNLQSSPMVVTIKDEPVDLDFCEDNIEVISESNDSDLEATNLEESMNSLTNNVQVELTDDEINFEKNQSTLTKDVDISIKSEPQDYDTDCTIEIESVTGSELVLNPLSNTEDRIMEADSTQKSNASTSASKKKARRGPHTHFRGARVFKQKCVHCQINLHSKYSYTKHMERFHSDKQNGTNQKSELENEEELVEDLEDELMSMEKDAPLTQVQQNIISQLKTFMCYSCEQTFNDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYKQHCKMSFECAMKIALVIPNEGEEKYFTCNMCLRPMQNRKQLLSHLSKHSDKQYEELISPTRSPPKLKPITPLPSPKQEIMKEPHNESLNIPHPYKNGDPAHNHICDLCGMIYRYKPNMLKHRDLCQRLSSEVRTSYKCVHCGMTYLVFRKFHSHITADHKKKEFTCSECNKKFRSPSDFLEHHEMHRMARNQKQPLQLKSDLMKHKQNLSTSFKDWDKFEAEMNANQLSDNNQYSCALCNLEFSTRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANISCVEYGTVEDDSRDSNSMNLSAISDPGPKHNNCKKCGRQFSNTANLKRHIRNIHPIEKPPYNCSHCWLSFKSKEIRDQHITSAHSKASKTMLRCPQCPQTFVFEANLDLHFKNHHKDCRFKCDICGKEFLKEGSLKIHRSWHNRENYGQSLKFMKKEDQKPLVEPKKEESFNTNVSGRPARARKSYPNSSPTKPNGNFQCQVCSDKFNDVTELRKHLWDVHCARNKSEKSFSGDEFQCELCTNIFPDKETLNVHIQWHKAQPILSDIRKTNFPCDICGKLYSSKKVLARHKKLHKASSVAISNFSSNQPLCTICHKVFNSNQSLQRHRLNLHSNIFSQRPQTQQYNNTRRMSQEESKPKKIKLEEEDKKIPFAMDAMSAGRKSVMCHGCKKFFPNMSVLYKHKQLVHNKSHMIRNIAKSFTMECVPLHCNDGKVACNICYKKFSGIPNLRQHFTVKHKNDRPKYKYACSIDGCKLTFPTQLTLKHHELSHTVTMFSCSLCNRHVFNRAAMTNHMLTVHNTVYDAEKNKNFHREMDLSSYVVEGAVDATCPRCKVKYPNNKAMKIHYFKIHEGTNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00142613;
- 90% Identity
- iTF_00142613;
- 80% Identity
- -