Alab020678.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apis laboriosa
Gene Symbol
-
Assembly
GCA_014066325.1
Location
JACEOM010000147.1:2073337-2076597[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.6 3e+02 3.2 0.8 2 19 326 343 325 345 0.87
2 16 0.027 5.2 8.7 0.5 2 20 382 400 381 402 0.92
3 16 0.0059 1.1 10.8 3.7 2 23 442 464 441 464 0.95
4 16 0.0032 0.6 11.7 0.2 1 23 470 492 470 492 0.96
5 16 4.4e-06 0.00083 20.7 2.6 1 23 498 520 498 520 0.96
6 16 4.1e-05 0.0079 17.6 2.2 1 23 529 551 529 551 0.96
7 16 1.9e-05 0.0036 18.7 1.8 1 23 557 579 557 579 0.98
8 16 1.6e-06 0.00031 22.0 0.5 1 23 584 606 584 606 0.97
9 16 0.078 15 7.3 6.0 1 23 613 635 613 635 0.98
10 16 0.0018 0.35 12.4 0.4 2 23 655 676 654 676 0.96
11 16 0.00026 0.05 15.1 0.5 3 23 685 706 684 706 0.97
12 16 0.00063 0.12 13.9 0.3 1 23 712 734 712 734 0.98
13 16 0.00046 0.088 14.3 2.7 1 23 740 762 740 762 0.98
14 16 3e-07 5.8e-05 24.3 2.4 1 23 768 790 768 790 0.99
15 16 4.7e-05 0.0089 17.4 0.9 1 23 796 818 796 818 0.93
16 16 0.00063 0.12 13.9 0.9 2 23 824 845 823 845 0.95

Sequence Information

Coding Sequence
atgaaaatagttTGCGCTgccaaaaattgtaaatattcttcGAGCAATAAGGATACgacaaatatcaaattcattaattttccaaatagtGATATTTCAAAAATATGGGCGCATCATTGTAATAGAAcagatcttttaataaaatctaacgaagaattacatttaaattattatatatgttctcATCATATAGaggatcatttttatataaataaaacagatcctgtaatattaaatgaaaatgctATTCCAACATTATTTGAATCATATAATGTTGCTGAAAAAGATTCAAGAAATATCTTTGAGAGAAATGAACAAACTGAAATAGCTAATAATGTTGTATTATCATATTGTGATATGGATGGTGAAATGGaacaatatcataatattagtattaaattttcaaatttatgtaGAATATGTGAAGAACCATCTTTCGATggcatcgaaatattttcattgaaaggaatggatttaaaattaaaagaaaagattaatttacatttaccaATCACAGTTAATTTGGAGGATTTAATGCcacaaaaattatgtataaattgctACAACAAATTAGAAGTTGCACATTCATTAGTTATAACATCTCTAAAAACAGATATGAAGTTGAAAaagcttttaaatataaatacagagCTAAATTATGATCacaaatatgatgaaataacaaaaaaatgttctttAGAAATAGCTGAAGAAATGTGTATTAATGAAGCGACTGAAATTACACCTATAGAATTATCTTGTAATAAAGTTAGTGAAATTACCAATCAAAAAATCTCAACTAAGTTTACTcacttagaaaatattaatatacataaaaataattttgtaaatgtcAGGAAAGAAGTGCAAtatgaattacataaatttgaaacacataatgaaaaaaatagagaaaatgaatatacaattacaacaaaaaattatctaaataatgaaacattaaataatgaaattcaatgctttttttgcaagaatacatttaaaacacaagaaatatttgaaaatcacaaaatattGTGTGATAAAGGGAAAACAATAATACAAAAGGATAAAGAAACTAATAATAGTATGAACAATAAAGAATCcagtaatataaatctaataaattttcaatttataaagacTTGTAATATTTGCCAAGAACATTTTGAAACTGAAAAAGACTTTATTgaacataaaatatcatattgtaaaattctttCACAGAATTATCAAAATCCTAGTAAAGAAAACAAGGaatcatataataactataatgattcttataatatcaaaagtaTTCCACCAAtggaaactaataaaaaatgtggtcattgtaatttgatttataatactaaaaaggaattattaaatcatattatggAATGTCATCAAGGTCAACTTTTATTTAGATGCATCATATgtgatagaaattttgaaaagtggTCTAGTTTAGATATACATGAAGCCACTCACAGAATAGATAAACCTTATTTATGTGATTTATGTGGAAAAAGCTTTAAACATTCTAACAATTTAAGAGGTCataaaagaattcatttaGATGATTCAAGAAAGAAACGACATATTTGTGATATTTGTGGAAAAGCATATAGATCTAGatTTCATTTGGGAGAGCATATGAACCaacataatgaaaataaacctTATTCTTGTGAAAAATGTGGTAAagcattttataaaagaatacaacTAAGACAACATAAATTATCACACGGatcaaataaacatatttgtcCAATATGTGGTGCAGCTTTCAATCGTAAAGGAAACATGAATACACATATAAAACGTCATAGTAATGGGGATAGTACATATACATGTAGCatATGTATGCATAGATGTAAATCAATGAGTGAGTTGAAATCACATAGAAAAATACATACAGAACAAGACATTATAgacaatatgaaaaagaaatataatgacaAAAGTATATGgcaatgtaaaaattgtaatcgaatattttcaacgcGAGCTATATTATTAAGTCATGAACGTATacataaagaagagaaaacaaGCGttgattgtaatatttgtggaaaaaaattagctaacaaaaattctttaatatatcataaaagatCCATTCATTCTTCGAACAAAATGTATACATGTCAATACTGTGAAGAATCGTTTATTTCCAAAGAAGCACGTCTTATACATGAAAGAATACATACTGGAGAACGTCCTTACGTTtgcaaaatatgtaaaatggaatataaatgtTCAAGTAATCTTAATCAacacataaaaattcattctgaTATTAAACCTTTCAAATGTACATATTGTAATAAGAGTTTCATACGTAAAGGAACATTAAATGTGCACAAAAGAATTCACACGGGAGAGAAACCATTTGCATGCATAATATGTGGTAGAACATTTTCgcaaaaaaatgatatgatcAAACACACTAAAACTCATAATGCTAAATCATTGTGTTGTGAACAATGTGACGAAGTTTTCGcaaggaaaaaagatattctgaaacatatttctttacatgaacaaaataatccaataattcaGGAATATATAGAAGTACAACAAGAAATAGAACCTTATGTAGAACATATAGCATGTTCTGAATTTGAatga
Protein Sequence
MKIVCAAKNCKYSSSNKDTTNIKFINFPNSDISKIWAHHCNRTDLLIKSNEELHLNYYICSHHIEDHFYINKTDPVILNENAIPTLFESYNVAEKDSRNIFERNEQTEIANNVVLSYCDMDGEMEQYHNISIKFSNLCRICEEPSFDGIEIFSLKGMDLKLKEKINLHLPITVNLEDLMPQKLCINCYNKLEVAHSLVITSLKTDMKLKKLLNINTELNYDHKYDEITKKCSLEIAEEMCINEATEITPIELSCNKVSEITNQKISTKFTHLENINIHKNNFVNVRKEVQYELHKFETHNEKNRENEYTITTKNYLNNETLNNEIQCFFCKNTFKTQEIFENHKILCDKGKTIIQKDKETNNSMNNKESSNINLINFQFIKTCNICQEHFETEKDFIEHKISYCKILSQNYQNPSKENKESYNNYNDSYNIKSIPPMETNKKCGHCNLIYNTKKELLNHIMECHQGQLLFRCIICDRNFEKWSSLDIHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRIHLDDSRKKRHICDICGKAYRSRFHLGEHMNQHNENKPYSCEKCGKAFYKRIQLRQHKLSHGSNKHICPICGAAFNRKGNMNTHIKRHSNGDSTYTCSICMHRCKSMSELKSHRKIHTEQDIIDNMKKKYNDKSIWQCKNCNRIFSTRAILLSHERIHKEEKTSVDCNICGKKLANKNSLIYHKRSIHSSNKMYTCQYCEESFISKEARLIHERIHTGERPYVCKICKMEYKCSSNLNQHIKIHSDIKPFKCTYCNKSFIRKGTLNVHKRIHTGEKPFACIICGRTFSQKNDMIKHTKTHNAKSLCCEQCDEVFARKKDILKHISLHEQNNPIIQEYIEVQQEIEPYVEHIACSEFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00141263;
90% Identity
iTF_00141869; iTF_00142506; iTF_00142597; iTF_00141263; iTF_00141353;
80% Identity
iTF_00141869;