Ador008237.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apis dorsata
Gene Symbol
-
Assembly
GCA_000469605.1
Location
NW:1162761-1166122[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.3 76 3.2 0.8 2 19 326 343 325 345 0.87
2 16 0.044 2.7 7.8 0.7 2 20 381 399 380 401 0.92
3 16 0.0047 0.28 10.8 3.7 2 23 441 463 440 463 0.95
4 16 0.0025 0.15 11.7 0.2 1 23 469 491 469 491 0.96
5 16 3.5e-06 0.00021 20.7 2.6 1 23 497 519 497 519 0.96
6 16 3.3e-05 0.002 17.6 2.2 1 23 528 550 528 550 0.96
7 16 7.6e-06 0.00046 19.6 1.7 1 23 556 578 556 578 0.98
8 16 1.3e-06 7.7e-05 22.0 0.5 1 23 583 605 583 605 0.97
9 16 0.062 3.7 7.3 6.0 1 23 612 634 612 634 0.98
10 16 0.001 0.061 12.9 0.4 2 23 654 675 653 675 0.97
11 16 0.00021 0.013 15.1 0.5 3 23 684 705 683 705 0.97
12 16 0.0005 0.03 13.9 0.3 1 23 711 733 711 733 0.98
13 16 0.00037 0.022 14.3 2.7 1 23 739 761 739 761 0.98
14 16 2.4e-07 1.5e-05 24.3 2.4 1 23 767 789 767 789 0.99
15 16 3.7e-05 0.0023 17.4 0.9 1 23 795 817 795 817 0.93
16 16 0.0005 0.03 13.9 0.9 2 23 823 844 822 844 0.95

Sequence Information

Coding Sequence
atgaaaatagtttGCGCTgccaaaaattgtaaatattcttcGAGCAACAAAGATACgacaaatatcaaattcattaattttccaaatagtGATATTTCAAAAATATGGGCGCATCATTGTAATAGAAcagatcttttaataaaatctaacgaagaattacatttaaattattatatatgttctcATCATATAGaggatcatttttatataaataaaacagatcctgtaatattaaatgaaaatgctATTCCAACATTATTTGAATCATATAATGTTGCTGAAAAAGATTCAAGAAATATCTTTGAGAGAAATGAACAAACTGAAATAGCTAATAATGTTGTATTATCATATTGTGATATGGATAGTGAAAtggaacaatataataatattagtattaaattttcaaatttatgtaGAATATGTGAAGAACCATCTTTCGATggcatcgaaatattttcattgaaaggaatggatttaaaattaaaagaaaagattaatttacatttaccaATCACAGTTAATTTGGAGGATTTAATGCCACAAAAATTATGTATGAATTGCTACAACAAACTAGAAGTTGCACATTCATTAGTTATAACATCTCTAAAAACAGATATGAAGTTGAAAaagcttttaaatataaatacagagCTAAATTATGATCAcaaatatgatgaaataacaaaaaaatgttctttaGAAATAGCTGAAGAAATGTGTATTAATGAAGCGACTGAAATTACACCTATAGAATTATCTTGTAATAAAGTTAGTGAAATTACCAATCAAAAAATCTCAACTAAGTTTACTcacttagaaaatattaatatacataaaaataattttgtaaatgtcAGGAAAGAAGTGCAAtatgaattacataaatttgaaacacataatgaaaaaaatagagaaaatgaatatacaattacaacaaaaaattatctaaataacgaaacattaaataatgaaattcaatgctttttttgcaagaatacatttaaaacacaagaaatatttgaaaatcacaaaatattGTGTGATAAAGGGAAAACAATAATACAAAAGGATAAAGAaactaataatatgaataataaagaatccagtaatataaatctaatgaattttcaatttataaagacTTGTAATATGTGCCAAGAACATTTTGAAACTGAAAAAGACTTTATTgaacataaaatatcatattgtaaaattctttCACAGAATTATCAAAATCCTAGTAAAGAAAACAAGGAAtcatataataactataatgattcttataatatcaaaagtaTTCCACCAAtggaaactaataaaaaatgtggccattgtaatttgatttataatactaaaaaagaattattaaatcatattatggAATGTCATCAAGGTCAACTTTTATTTAGATGCATTATATgtgatagaaattttgaaaagtggTCTAGTTTAGATATACATGAAGCCACTCACAGAATAGATAAACCTTATTTATGTGATTTATGTGGGAAAAGCTTTAAACATTCTAACAATTTAAGAGGTCataaaagaattcatttagatgattcaagaaagaaacgaCATATTTGTGATATTTGTGGAAAAGCATATAGATCTAGatTTCATTTGGGAGAGCATATGAACcaacataatgaaaataaacctTATTCTTGTGAAAAATGTGGTAAagcattttataaaagaatacaaCTAAGACAACATAGATTATCACATGGatcaaataaacatatttgtcCAATATGTGGTGCAGCTTTCAATCGTAAAGGAAACATGAATACACATATAAAACGTCATAGTAATGGGGGTAGTACATATACATGTAGtatATGTATGCATAGATGTAAATCAATGAGTGAATTGAAATCACatagaaaaatacatacaGAACAAGACATTATagagaatatgaaaaagaaatataatgacaaaaaaatatggcaatgtaaaaattgtaatcgaatattttcaacgcgagctatattattaaatcatgaaCGTATACATAAAGAAGAGAGAACAAGCGttgattgtaatatttgtggaaaaaaattagctaacaaaaattctttaatatatcataaaagatCCATTCATTCTTCGAACAAAATGTATACATGTCAATACTGTGAAGAATCGTTTATTTCCAAAGAAGCACGTCTTATACATGAAAGAATACATACTGGAGAACGTCCTTACGTTtgcaaaatatgtaaaatggaatataaatgtTCAAGTAATCTTAATCAacacataaaaattcattctgaTATTAAACCTTTCAAATGTACATATTGTAATAAGAGTTTCATACGTAAAGGAACATTAAATGTGCACAAAAGAATTCACACGGGAGAGAAACCATTTGCATGTATAATATGTGGTAGAACATTTTCgcaaaaaaatgatatgatcAAACACACTAAAACTCATAATGCTAAATCATTATGTTGTGAACAATGTGACGAAGTTTTCGcaaggaaaaaagatattctgaaacatatttctttacatgaacaaaataatccaataattcAGGAATATATAGAAGTACAACAAGAAATAGAACCTTATGTAGAACATATAGCATGTTCTGAATTTGAATga
Protein Sequence
MKIVCAAKNCKYSSSNKDTTNIKFINFPNSDISKIWAHHCNRTDLLIKSNEELHLNYYICSHHIEDHFYINKTDPVILNENAIPTLFESYNVAEKDSRNIFERNEQTEIANNVVLSYCDMDSEMEQYNNISIKFSNLCRICEEPSFDGIEIFSLKGMDLKLKEKINLHLPITVNLEDLMPQKLCMNCYNKLEVAHSLVITSLKTDMKLKKLLNINTELNYDHKYDEITKKCSLEIAEEMCINEATEITPIELSCNKVSEITNQKISTKFTHLENINIHKNNFVNVRKEVQYELHKFETHNEKNRENEYTITTKNYLNNETLNNEIQCFFCKNTFKTQEIFENHKILCDKGKTIIQKDKETNNMNNKESSNINLMNFQFIKTCNMCQEHFETEKDFIEHKISYCKILSQNYQNPSKENKESYNNYNDSYNIKSIPPMETNKKCGHCNLIYNTKKELLNHIMECHQGQLLFRCIICDRNFEKWSSLDIHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRIHLDDSRKKRHICDICGKAYRSRFHLGEHMNQHNENKPYSCEKCGKAFYKRIQLRQHRLSHGSNKHICPICGAAFNRKGNMNTHIKRHSNGGSTYTCSICMHRCKSMSELKSHRKIHTEQDIIENMKKKYNDKKIWQCKNCNRIFSTRAILLNHERIHKEERTSVDCNICGKKLANKNSLIYHKRSIHSSNKMYTCQYCEESFISKEARLIHERIHTGERPYVCKICKMEYKCSSNLNQHIKIHSDIKPFKCTYCNKSFIRKGTLNVHKRIHTGEKPFACIICGRTFSQKNDMIKHTKTHNAKSLCCEQCDEVFARKKDILKHISLHEQNNPIIQEYIEVQQEIEPYVEHIACSEFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00141263;
90% Identity
iTF_00141968;
80% Identity
iTF_00141263;