Alab034885.1
Basic Information
- Insect
- Apis laboriosa
- Gene Symbol
- -
- Assembly
- GCA_014066325.1
- Location
- JACEOM010004364.1:6770051-6773793[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.1 4e+02 2.8 7.1 1 23 39 62 39 62 0.92 2 20 3.1e-06 0.0006 21.1 0.3 1 23 68 90 68 90 0.97 3 20 2.3e-05 0.0043 18.4 1.5 1 23 96 118 96 118 0.97 4 20 0.011 2.2 9.9 0.6 1 23 124 146 124 146 0.98 5 20 5.2e-06 0.00099 20.4 9.7 1 23 152 174 152 175 0.96 6 20 0.00016 0.03 15.8 1.5 1 23 191 214 191 214 0.96 7 20 0.013 2.5 9.8 1.5 3 23 224 244 222 244 0.96 8 20 2.1e-06 0.00039 21.7 0.6 2 23 251 272 251 272 0.98 9 20 2.2e-05 0.0041 18.5 0.6 3 23 280 300 278 300 0.97 10 20 2.1e-06 0.00041 21.6 0.9 1 23 306 328 306 328 0.99 11 20 0.099 19 7.0 0.7 2 23 368 390 367 390 0.96 12 20 6.4e-05 0.012 17.0 1.0 1 23 396 419 396 419 0.97 13 20 0.093 18 7.1 0.7 2 23 425 446 424 447 0.94 14 20 1.6e-05 0.003 18.9 0.6 1 23 452 474 452 474 0.98 15 20 0.001 0.19 13.2 0.5 2 23 481 503 480 503 0.94 16 20 6.1e-05 0.012 17.1 2.1 1 23 524 547 524 547 0.93 17 20 0.002 0.38 12.3 0.1 1 23 558 580 558 580 0.95 18 20 0.0076 1.4 10.5 3.6 1 23 586 608 586 608 0.94 19 20 4.7e-07 8.9e-05 23.7 1.1 1 23 614 636 614 636 0.98 20 20 1.6e-05 0.0031 18.9 0.1 1 21 642 662 642 663 0.96
Sequence Information
- Coding Sequence
- ATGTACTTTGTACGCAAACAGGCTTTAATTTTTATTCAAACGGATCACGAATCACACGTGTTCTTCATCAACGCCTCTGTTTTCAGGACACGAAGAATAACCTCTCGAGCGATTCACGAATGCATCAAATGCGGGGCCTGTTTCTGCCACATGAGAAAACTGGTCGAGCATCTGAAGAATCTGCACAACATCGACCGAGCCTTCAGCTGCGACGAGTGCGGGAAAACCTTCAGAAGTCCCATGAACATAGCTCGTCACAAATTAATCCACACAGGCTCGAAGAGGTTCGCGTGCGATTTGTGCGATTATAAATCAAACCAGAAGTCGAATCTCGAGAGTCATCGTCGGCGACACATCAAAGATTACTCGTTCAGGTGCGGCCAGTGTCAGAAAGGATTCTTCCTGAGGACAGAGTACGTGGAGCACGTGAACGTGCACACGAGAAAGGAGATCTATCGATGCGACCATTGCACGAAAACCTATCCGTACAAGAAGAATCTGACCCATCACATGAGGACCCACCACGCGAATATTTTACCGGCCGAGATGAAAAGTGGCGCGAAACGGAGACACGTGTGCACGATCTGCCTGGAAGATTTCACGCGGAAACGATTGTTGGAAACCCATTTGAGGCAATTGCACGGGTTGCGCGAGAAAATGGGGCATCTGTGCGATCTTTGCGGCGCTATGCTGTCCTCCAGAAGAAGGCTGATGGTGCACAGGCGGCGTCACGTCAACGAGAAGATCGCGAAATGCGATGTGTGCGACAAACAGTTCGCGAGCAAAGAGAACCTAAGTATTCATCGGCGAGTGCACACGGGGGAAAAACCATACGGTTGTTCTCAGTGTGGAAGAAGATTCGCACAGAGGACCTCTTTGATCTTGCATCTTAGGTATCATTCGGGGGAAAGGCCGTATCAATGCGTGGATTGCGGCAAGGGATTCGTATCGGGAAGTTTTTTGAGGAAACATCGCAAGACGCACGAGAAAACCTCCAACTGGAGCAACGAGCACGACGAGTTTAGCAGCTGCGAAGATTTCAGAATCAAGAACGAGGATGTCCTTTTCGATCCTGAGCAGAAATTCGAGGGAAACGAGAAAGTCTGCGATCTGTGCCAAGAAAAGTTTCACTTCGTAACCAGATTAGTGGCACATCTGAGGATCGTTCACGGTATCCATAGGCCCTTCAAGTGTGCCACTTGTGAAAAGACGTATCCGCAACAATTCATGTTGAACGCTCACGTGAAAAAGTCCCATACCCCAAAAACTATACCCTGTAATCAGTGCAGTTTCATGGGGGTGAATGCTACCGACGTGGAGAGGCATACGAAACGACATCATCGAGAGGTGAAATTCACGTGTGAAATCTGCAGTGAGAACTTCGTGGACAAGGATTCTTTGACGACTCATACGACCATGCACAACTTCATGCAATTTCAACAGTGCAATGCTTGTGGTACGACTTTCAATGACGTGTACAGTCTGAAGGAGCACAATCGTCTCTATCACTACGACCCAGCTGCATTGATTCAAGAGAAACTCGTAACAGACGATCCCCAAACCGCAGAGCACAAATGCGACGTTTGCGGCAAGGTTTACAAGTACAAATCAGTTCTGAAGCAGCATAAGGTGAAGGCTCACGGTGACATGCCCAATTACGAGAGGCGTAGATATTTATGCGCACTTTGCGGCAAAGAGCTAAAAACAGCGAAAGGCCTCGAGATACACAATCGATCGCACACAGGGGAAAAGCCTTACACCTGCGAGGTATGCGGCAAGTGTTTCGCGTGCGAGACCCTCCTCAGGACTCATAATGTCACTCACACAGGCGAGAGAAAGTACTCTTGCGACCAGTGCGGCAAAGCTTTTACACAGAGATCCACGTTGGTCGTTCACAAACGTTACCATACTGGTGAACGGCCATACGTTTGTCCTCGGTGTGGAAAAGGTTTCGTGACGAGAACCGTTTTGAACACTCATATGAAATCCTGTCGTTGA
- Protein Sequence
- MYFVRKQALIFIQTDHESHVFFINASVFRTRRITSRAIHECIKCGACFCHMRKLVEHLKNLHNIDRAFSCDECGKTFRSPMNIARHKLIHTGSKRFACDLCDYKSNQKSNLESHRRRHIKDYSFRCGQCQKGFFLRTEYVEHVNVHTRKEIYRCDHCTKTYPYKKNLTHHMRTHHANILPAEMKSGAKRRHVCTICLEDFTRKRLLETHLRQLHGLREKMGHLCDLCGAMLSSRRRLMVHRRRHVNEKIAKCDVCDKQFASKENLSIHRRVHTGEKPYGCSQCGRRFAQRTSLILHLRYHSGERPYQCVDCGKGFVSGSFLRKHRKTHEKTSNWSNEHDEFSSCEDFRIKNEDVLFDPEQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCATCEKTYPQQFMLNAHVKKSHTPKTIPCNQCSFMGVNATDVERHTKRHHREVKFTCEICSENFVDKDSLTTHTTMHNFMQFQQCNACGTTFNDVYSLKEHNRLYHYDPAALIQEKLVTDDPQTAEHKCDVCGKVYKYKSVLKQHKVKAHGDMPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00361060;
- 90% Identity
- iTF_00140730;
- 80% Identity
- -