Acer007207.3
Basic Information
- Insect
- Apis cerana
- Gene Symbol
- -
- Assembly
- GCA_029169275.1
- Location
- CM054904.1:6721246-6724323[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.6 2.9e+02 2.8 7.1 1 23 26 49 26 49 0.92 2 20 3.9e-06 0.00044 21.2 0.3 1 23 55 77 55 77 0.97 3 20 2.4e-05 0.0027 18.7 1.4 1 23 83 105 83 105 0.97 4 20 0.014 1.6 9.9 0.6 1 23 111 133 111 133 0.98 5 20 6.4e-06 0.00072 20.5 9.7 1 23 139 161 139 162 0.96 6 20 0.00023 0.026 15.6 1.7 1 23 178 201 178 201 0.96 7 20 0.15 17 6.7 0.8 3 23 211 231 209 231 0.95 8 20 2.1e-06 0.00024 22.0 0.6 2 23 238 259 238 259 0.98 9 20 2.6e-05 0.003 18.5 0.6 3 23 267 287 265 287 0.97 10 20 2.6e-06 0.0003 21.7 0.9 1 23 293 315 293 315 0.99 11 20 0.12 14 7.0 0.7 2 23 356 378 355 378 0.96 12 20 7.8e-05 0.0088 17.0 1.0 1 23 384 407 384 407 0.97 13 20 0.11 13 7.1 0.7 2 23 413 434 412 435 0.94 14 20 2e-05 0.0022 18.9 0.6 1 23 440 462 440 462 0.98 15 20 0.0013 0.14 13.2 0.5 2 23 469 491 468 491 0.94 16 20 7.4e-05 0.0084 17.1 2.1 1 23 512 535 512 535 0.93 17 20 0.0024 0.27 12.3 0.1 1 23 546 568 546 568 0.95 18 20 0.0093 1.1 10.5 3.6 1 23 574 596 574 596 0.94 19 20 5.7e-07 6.5e-05 23.8 1.1 1 23 602 624 602 624 0.98 20 20 2e-05 0.0023 18.9 0.1 1 21 630 650 630 651 0.96
Sequence Information
- Coding Sequence
- ATGGATCACGAATTACACATGTTCTTCATCAACGCCTCTGTTTTCAGGACACGAAGAATAACCTCTCGAGCGATTCACGAATGCATCAAATGCGGGGCCTGTTTCTGCCACATGAGAAAACTGGTCGAGCATCTGAAGAACCTGCACAACATCGACAGAGCCTTCAGCTGCGACGAGTGCGGCAAAACCTTCAGAAGTCCCATGAACATAGCTCGTCACAAGTTGATCCACACAGGCTCGAAGAGGTTCGCCTGCGATCTGTGCGACTACAGATCAAACCAAAAGTCGAATCTCGAGAGTCATCGTCGGCGACACACCAAAGATTACTCGTTCAGATGCGGCCAGTGTCAGAAAGGATTCTTCCTGAGGACGGAGTACGTGGAGCACGTGAACGTGCACACGAGAAAGGAGATCTATCGATGCGACCACTGCACCAAAACCTATCCGTACAAGAAGAACCTGACCCATCACATGAGGACCCATCACGCGAACGTTTTACCGGCCGAGATGAAAAGTGGCGCGAAACGGAAACACGTGTGCACGATCTGTCTGGAAGCTTTCACGCGGAAACGATTCTTGGAAACCCATTTGAGGCAATTGCACGGACTGCACGAGAAAATGGGGCATCTGTGCGATCTTTGCGGCGCTATGCTCTCCTCTGGCAGAAGGCTGATGGTGCACAGGCGGCGTCACGTTAACGAGAAGATCGCGAAATGCGATGTGTGCGACAAACAGTTCGCGAGCAAAGAGAACCTCAGTGTTCATCGGCGGGTGCACACAGGGGAAAAACCGTACGGTTGTTCTCAGTGTGGAAGAAGATTCGCACAGAGGACCTCTTTGATCTTGCATCTTAGGTATCATTCGGGGGAAAGGCCGTATCAATGCGTGGATTGCGGCAAGGGATTCGTATCGGGAAGTTTTTTGAGGAAACATCGCAAGACGCACGAGAAAACGTCGCACAACTGGAGCAACGAGCACGACGAGTTTAGCAGCTGCGAAGATTTCAGAATCAAGAACGAGGATGTCCTTTTCGATCCTGAGCAGAAATTCGAGGGAAACGAGAAAGTCTGCGATCTGTGCCAAGAAAAGTTTCACTTCGTAACCAGATTAGTGGCACATCTCAGGATCGTCCACGGTATTCATAGACCCTTCAAGTGTGCCACTTGTGAAAAGACGTATCCGCAACAATTCATGCTGAACGCTCACGTGAAAAAGTCCCATACCCCAAAAACTATACCGTGTAATCAGTGCAGTTTCATGGGGGTGAATGCTACCGATGTGGAAAGGCATACGAAACGACACCATCGAGTGGTGAAATTCACATGTGAAATCTGCAGTGAAAACTTCGTGGACAAAGATTCCTTGACGACTCATACGACCATGCACAACTTCATGCAATTTCAACAGTGCAATGCTTGTGGCACGACTTTCAATGACGTGTACAGTCTGAAGGAGCACAATCGTCTCTATCACTACGACCCAGCCGCATTGATTGAAGAGAAACTCGAAACAGACGATCCCCAAACCGCAGAGCACAAATGCGACGTTTGCGGCAAGGTTTACAAGTACAAATCAGTTCTGAAGCAGCATAAGGTGAAGGCTCACGGTGACATGCCCAATTACGAGAGGCGTAGATATTTATGCGCACTTTGCGGCAAAGAGCTAAAAACAGCGAAAGGCCTCGAGATACACAATCGATCGCACACCGGGGAAAAGCCTTACACCTGCGAGGTATGCGGCAAGTGTTTCGCGTGCGAGACCCTCCTCAGGACTCACAATGTCACGCACACAGGCGAGAGAAAGTACTCTTGCGACCAGTGTGGCAAAGCTTTCACGCAGAGATCCACGTTGGTCGTTCACAAACGTTACCATACTGGTGAACGGCCATACGTTTGTCCTCGGTGTGGAAAAGGTTTCGTGACGAGAACCGTTTTGAACACTCATATGAAATCCTGTCGTTGA
- Protein Sequence
- MDHELHMFFINASVFRTRRITSRAIHECIKCGACFCHMRKLVEHLKNLHNIDRAFSCDECGKTFRSPMNIARHKLIHTGSKRFACDLCDYRSNQKSNLESHRRRHTKDYSFRCGQCQKGFFLRTEYVEHVNVHTRKEIYRCDHCTKTYPYKKNLTHHMRTHHANVLPAEMKSGAKRKHVCTICLEAFTRKRFLETHLRQLHGLHEKMGHLCDLCGAMLSSGRRLMVHRRRHVNEKIAKCDVCDKQFASKENLSVHRRVHTGEKPYGCSQCGRRFAQRTSLILHLRYHSGERPYQCVDCGKGFVSGSFLRKHRKTHEKTSHNWSNEHDEFSSCEDFRIKNEDVLFDPEQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCATCEKTYPQQFMLNAHVKKSHTPKTIPCNQCSFMGVNATDVERHTKRHHRVVKFTCEICSENFVDKDSLTTHTTMHNFMQFQQCNACGTTFNDVYSLKEHNRLYHYDPAALIEEKLETDDPQTAEHKCDVCGKVYKYKSVLKQHKVKAHGDMPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00361060;
- 90% Identity
- iTF_00141960;
- 80% Identity
- -