Alab019192.1
Basic Information
- Insect
- Apis laboriosa
- Gene Symbol
- bab2
- Assembly
- GCA_014066325.1
- Location
- JACEOM010001026.1:1455309-1469967[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.4e-13 2.8e-09 37.5 0.0 1 39 419 458 419 462 0.90 2 4 4.3e-12 2.3e-08 34.6 0.0 2 39 474 511 473 514 0.94 3 4 6e-19 3.2e-15 56.6 0.0 2 45 529 573 528 573 0.97 4 4 6.9e-19 3.6e-15 56.4 0.1 1 42 580 622 580 623 0.97
Sequence Information
- Coding Sequence
- atGGAGACGGATCGTTATTGGGGCGTGCACTACAGCGGCGGCATGGCCGGGCAGCACTACTGCCTGCGCTGGAATAACTACCAATCAAACATGACGTCCGTTTTCCATCAACTACTTCAAACGGAAGCTTTTGTCGACGTTACCCTGGCATGTAACGAAGCTTCCTTAAAAGCGCACAAAGTGGTATTATCGGCGTGCAGTTCCTACTTTCAAAAGCTCCTACTTTCAAATCCCTGCAAACATCCGACAATCATTATGCCACAAGATGTATGCTTCAATGatctcaaatttattatagaattcgtCTACAGAGGAGAGATCGATGTTTCGCAAGCAGAACTTCAGTCACTGTTGAAAACAGCCGATCAACTAAAGATCAAAGGATTGTGCGAGGTGCCTGAAAGCAGAGACGGCCCACCCTCGGTAAGTTTGAGCTCACCGCCGAGAGAGCCTGGTACACCTAGGATAAATTTCACCAAGCTGAAGAGGCATCATCCGAGATACAAGAGGCCCAGAACGACGTTCGAGCCTCGTGCCACGGATTCCAGACATTACGATCGATACAAAGAGGaggaatcgaacgaaaattacAATTGGGAGCATAAAGAGACCCACATAGACTGGCAACCCGAAGATGAAGAGTGCACGGAGGCAACAGCGGGAGCAGTAGTCTTGGAAACTTGCCAACGCAACAGTAACAATAGTACCATTACCACCGGCAACACCAGCACCACtagcaataataacaataataataataataataataataacaacaacggCGCTAACGACAACGGCAACGGTAACAGTGCGAGCAATAACAACAACGgtgACATGTTTTGTCATACAGGCCTCGGACATTATGGCCATCATCCGGATCCCGGAGAGGTTGACCTACCACCTGAAACACAACCAACACCACCAAGTGCCACGTTGGTCGGCACTACGATTACCCATTTAAGAGACCCAGATCATCATTCCACAGACATTCAAAATTGTGACAgtgtaaaaatcaaattcgaaACGTTGCATACGATGGATTCGTCGGAcacgatcgatatcgatagcCACATGTCGGATCGGGCGAGCGTTAGTTCAAAGAACGCGGCTGATAGTGATAATATGATGATGATCACACCAGAGTTACTTGGATTAATGCCCTCTGGAAGTTCTGTTCATTCGGATTCAGgcgaaaataattcaagaggGCATTCTGGACAATCCAGCTCTCATCACCATGGCTCAAAATCATGGACTCAAGAGGATATGGATGCTGCTCTGGAAGCATTGAGAAATCATGATATGAGTCTTACGAAAGCTTCTGCAACGTTCGGTATACCCTCGACGACCTTGTGGCAAAGAGCGCATCGGCTTGGCATCGATACTCCAAAAAAGGATGGACCTACTAAATCATGGAGCGATGAGAGTTTAAACAATGCGCTTGATGCATTACGAACGGGCACAATATCGGCGAACAAAGCTTCAAAAGCGTTTGGCATACCATCGAGCACCTTGTACAAAATCGCGAGAAGAGAAGGCATCAGATTGGCTGCACCTTTCAACGCCAGTCCTACTACTTGGTCACCAGCTGATCTCGATCGCGCCCTCGAAGCGATACGTTCCGGTCAAACGTCTGTGCAAAGAGCGTCCACGGAATTTGGAATACCAACAGGAACGTTGTATGGTCGATGCAAAAGAGAAGGAATAGAACTTAGTAGGAGCAATCCTACACCATGGAGCGAAGATGCTATGACCGAAGCTCTCGAAGCTGTTaggttaggtcATATGAGCATTAATCAAGCAGCAATTCATTATAACCTACCGTACTCTTCTTTATACGGTCGTTTTAAGAGAGGAAAATACGAAGAACCAACAGTTGGTGAGATATCTCAAGACGGTAGCAGTCCCCATTTCCATCAAAGTCCAAGTCAAAATCATTCATCTGCCGTACCGGATCAAATGCCGTATCAAGGCAGCTGA
- Protein Sequence
- METDRYWGVHYSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYNWEHKETHIDWQPEDEECTEATAGAVVLETCQRNSNNSTITTGNTSTTSNNNNNNNNNNNNNNGANDNGNGNSASNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPTVGEISQDGSSPHFHQSPSQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00230773;
- 80% Identity
- iTF_00141914;