Ador002218.1
Basic Information
- Insect
- Apis dorsata
- Gene Symbol
- prdm10
- Assembly
- GCA_000469605.1
- Location
- NW:573220-578729[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0019 0.12 12.0 0.1 2 23 512 533 511 533 0.95 2 11 0.00046 0.028 14.0 0.3 3 23 547 567 545 567 0.96 3 11 0.0058 0.35 10.5 3.8 1 23 584 606 584 606 0.91 4 11 0.0038 0.23 11.1 2.6 2 23 615 636 614 636 0.96 5 11 6.2e-05 0.0038 16.7 0.3 1 23 643 665 643 665 0.98 6 11 0.004 0.24 11.0 1.8 1 23 672 694 672 695 0.95 7 11 0.00025 0.015 14.8 1.7 1 23 700 722 700 722 0.98 8 11 1.5e-05 0.00092 18.7 4.1 1 23 728 751 728 751 0.96 9 11 0.0011 0.065 12.8 1.7 1 23 784 807 784 807 0.97 10 11 2.4e-05 0.0014 18.0 2.4 1 23 829 852 829 852 0.97 11 11 0.00098 0.059 13.0 3.4 2 23 889 911 888 911 0.96
Sequence Information
- Coding Sequence
- ATGGATCTAAGGGGCCCTCCTGAGGGGGCCCCTATTAACTCTTTTGAGATATCTATATCTGACAATTGGCCTACAGATTCTCTTTCTATATCAATgtgtgaacaaaaaaaaatgaataataataaattattatttttaactgtgGAATATGTAGAAGATCCATCACGAGAATATTCTCGTTTATTTCCAACATATGAACAAGTTTCATTTTCTCCTAGAGCTTCATCTCCACTTTCTGATTTTAAACATCGTGTTAGTCCTCTGGACCCTAATATGAGTTCAGCTGCTAGATATTCACCCACTCCAGTACAACTTCCACCATCTCCTTTTCATAATTCTGTTGTTGTATTGCaaggttcttcttcttctttaatatcCTCATCTGAGtcaaatgaaagaataaatattaattatgtttctcAATTGACTCATCCAATCGATACACAACATGTACAACAATCTGATAGTTCTACTGACTTTGTTGCCAACGAAAATGAGGAGCAATTGATGTCTAGTAATGAATTGATTCTTATGCAAGaatcTAATTCTGAATTAGAATCAGCTACAGCTCCATTGATGCTAACAGGAATACCAAGTACAGATTTTACATTAAGTAGAGATTTTCTTGTCATGCAAGATGATCAAATGaatgttataaattcatttaagacACAGAATCTTGATGTAGATGATTCTACACATCTTTCATCAACAgcacaaaattcaaataaagaaaataatatagatccCTTAGATACAACCAATGaacaagaaattaatgaaattttaatgtctACTGAAGACAAAAaagattgtgaaaaaaaacatGTCAGACGTTCAAAACGtcgtataaatgataaaaaaaatatttGTTGTAATGAATGTGATGATGTATGTACTGGTGATAATTGTACTTCACATAATGTATGTACAATAGCAGATCAACCAGTACCATCACGTGCTATAGCAACACTGCCAGGATCATATCTttctataaacaaattatctaATTCTGACATTGTATTGGGTGGATCAGATTATGGAGTGTTTGCGAAACGTTATATACAAAAACGTACTCAATTTGGACCTATAGAGGGTATTTTATACCCTTATGATGGTACaccatttaaaaatgaattgccATTGCTCTATGaaactgaaaataaagaatttttaaaagtagatGTTTCAAATGAAAatgcTTCAAACTGGATGCGATTTGTTAGACCTGCATTAACATATAAAGATCAAAATTTAGTAATTTGTCAACAACGTGATGGTATAGTATTTTTGACTACAAGAAGTATTTTACCAAAGGAAGAACTAAAAGCTGGTCCTAGTACTGATTATGCAATCCGTAGAAATTTGATACCTCTAAAATCCATGCAAGAAATGAATGATGATAAAGaacacAAAAGTCAGTTATCTACTTGGTCACGATTAGACGATACTCATTCACGacgtatgaaaatatttcgtggtagaaatttaaaagagaaagaaaattcgagaCAAAATAATTCTAAGGAATGGAAATGTTCTGTTTGTGgtttgatttttagaaaaccACTTTTACTTAATTTACATACTCTCTTACATGgttctgataaaataaaaactaaaatacaaTCTACAATTTGTCCACAGTGTGgattacaatttcaaaaacaaaaagaattgattaatCATATTTCACAACATGGgagattatctttaaaaaaagaaaaaagattgacTTCTTTGTCGACATATAAGTGTTCAATGTGCTATAAACGTTTTGCAACAAAAGTGCGATTGCAACAACACTGTTTAGTGCATGGTGCTGAAGACCAAAAACCACTGCCATgcaatatttgtttcaaaagatttatgaataattcagCACTTTCTTGTCATTTAAAAACACACaaagaaaataaacaaatatttgaatgtcCAATGTGTCGACAACTATTTAGTCAAAGTATATCATTAAAAGATCATATTGAAActcataaaaatgaagatgGCACTTTTAGCTGTCCTTACTgccaaagaatatttattaaatattcgattattcgtaAACATATTAGAGCACATCATTGTGAAAGAAAGCATAAATGTCAAATTTGTGCAAAACGATTTGCTACAGTAGATAAATTACAAATGCATTTACTAAAACATTCTGATCATAGagaatttcACTGCGCAAATTGtggtaaacaatttaaaagaaaagataaattaaaagaacatatgactaaattacataattcacAAACAGCTACTGATGAACAAATGTCACAAGTAACACAAACTAAAAAGTTTGTTCCAAAGGTAAATCCTAACGATTATAATCGCTTTATTTACAAATGTCATCAATGTTTAGTGGGTTTCAAACGAAGGGGAATGCTTGTCAATCATTTAGCAAAACGACATCCAGATGTTGCGCCAGAATCTGTACcagaattaaatttaccaATTTTACGTCAAACGAGAGATTACTATTGTCAATATTGCGATAAGgttTATAAAAGTAGCAGTAAACGAAAAGcacatattatgaaaaatcatcCGGGAGCTGCTTTACCACCAAGTAATCGACAGAAAGAATCAGATTATTCTGATTTACCAAATCCAACATTTAGTCAAACTGTTGGTAGTATTACAACTACACCTCAGAGTTGTCAATGGTGTCATAAACAATATGCTAGTAAGGCAAAACTCTTACAGCATCAACGAAAAAAGCATTCTAATCTAATGGAACCGGCTGATCAGGTACCGCGTTCACGTAATCGACAGTCACATAATCAAAATCAACCTCCAGTACTTATTGAAGATCACTTTGTATTATCTGATTATATTCAAGCATGTGAAAcaaattcagatttttttaaaccaagaataatcaaaatatctgATGATGTTGATCTAATAAGCAATGGATTAGAGATAGTTGGGCAACAATTTGTTCGTATGCGTGACATACGTTGA
- Protein Sequence
- MDLRGPPEGAPINSFEISISDNWPTDSLSISMCEQKKMNNNKLLFLTVEYVEDPSREYSRLFPTYEQVSFSPRASSPLSDFKHRVSPLDPNMSSAARYSPTPVQLPPSPFHNSVVVLQGSSSSLISSSESNERININYVSQLTHPIDTQHVQQSDSSTDFVANENEEQLMSSNELILMQESNSELESATAPLMLTGIPSTDFTLSRDFLVMQDDQMNVINSFKTQNLDVDDSTHLSSTAQNSNKENNIDPLDTTNEQEINEILMSTEDKKDCEKKHVRRSKRRINDKKNICCNECDDVCTGDNCTSHNVCTIADQPVPSRAIATLPGSYLSINKLSNSDIVLGGSDYGVFAKRYIQKRTQFGPIEGILYPYDGTPFKNELPLLYETENKEFLKVDVSNENASNWMRFVRPALTYKDQNLVICQQRDGIVFLTTRSILPKEELKAGPSTDYAIRRNLIPLKSMQEMNDDKEHKSQLSTWSRLDDTHSRRMKIFRGRNLKEKENSRQNNSKEWKCSVCGLIFRKPLLLNLHTLLHGSDKIKTKIQSTICPQCGLQFQKQKELINHISQHGRLSLKKEKRLTSLSTYKCSMCYKRFATKVRLQQHCLVHGAEDQKPLPCNICFKRFMNNSALSCHLKTHKENKQIFECPMCRQLFSQSISLKDHIETHKNEDGTFSCPYCQRIFIKYSIIRKHIRAHHCERKHKCQICAKRFATVDKLQMHLLKHSDHREFHCANCGKQFKRKDKLKEHMTKLHNSQTATDEQMSQVTQTKKFVPKVNPNDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRQKESDYSDLPNPTFSQTVGSITTTPQSCQWCHKQYASKAKLLQHQRKKHSNLMEPADQVPRSRNRQSHNQNQPPVLIEDHFVLSDYIQACETNSDFFKPRIIKISDDVDLISNGLEIVGQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00232789;
- 90% Identity
- iTF_00983779;
- 80% Identity
- -