Basic Information

Insect: Apis dorsata
Gene Symbol: -
Assembly: GCA_000469605.1
Location: NW:919469-929410[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.43 26 4.6 5.6 2 23 241 263 240 263 0.96

2 21 0.027 1.7 8.4 2.0 1 23 313 335 313 335 0.97

3 21 0.22 13 5.6 1.4 1 23 384 406 384 406 0.98

4 21 0.022 1.4 8.7 0.2 1 20 461 480 461 482 0.93

5 21 2.8 1.7e+02 2.1 2.5 1 20 494 513 494 517 0.73

6 21 1.8e-05 0.0011 18.4 2.8 1 23 522 544 522 544 0.98

7 21 0.00018 0.011 15.3 0.3 1 23 592 614 592 614 0.97

8 21 0.00046 0.028 14.0 0.1 1 23 620 642 620 642 0.97

9 21 1.5e-06 9e-05 21.8 1.7 3 23 687 708 686 708 0.96

10 21 0.15 9.1 6.1 0.8 1 14 715 728 715 738 0.81

11 21 0.0028 0.17 11.6 0.9 2 23 747 768 746 769 0.94

12 21 0.00069 0.042 13.4 0.3 1 23 774 796 774 796 0.96

13 21 0.057 3.4 7.4 0.4 1 20 851 870 851 870 0.97

14 21 0.00026 0.016 14.8 0.1 1 23 889 911 889 911 0.98

15 21 0.00016 0.0098 15.4 0.5 1 23 925 947 925 947 0.97

16 21 5.3e-05 0.0032 17.0 2.7 3 23 964 985 963 985 0.95

17 21 0.005 0.3 10.7 1.5 2 23 1038 1060 1037 1060 0.93

18 21 0.007 0.42 10.3 0.3 3 23 1089 1110 1087 1110 0.92

19 21 0.0073 0.44 10.2 0.7 1 23 1119 1143 1119 1143 0.95

20 21 0.0043 0.26 11.0 1.4 1 23 1148 1171 1148 1171 0.97

21 21 0.082 4.9 6.9 0.7 2 23 1201 1223 1201 1223 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.43	26	4.6	5.6	2	23	241	263	240	263	0.96
2	21	0.027	1.7	8.4	2.0	1	23	313	335	313	335	0.97
3	21	0.22	13	5.6	1.4	1	23	384	406	384	406	0.98
4	21	0.022	1.4	8.7	0.2	1	20	461	480	461	482	0.93
5	21	2.8	1.7e+02	2.1	2.5	1	20	494	513	494	517	0.73
6	21	1.8e-05	0.0011	18.4	2.8	1	23	522	544	522	544	0.98
7	21	0.00018	0.011	15.3	0.3	1	23	592	614	592	614	0.97
8	21	0.00046	0.028	14.0	0.1	1	23	620	642	620	642	0.97
9	21	1.5e-06	9e-05	21.8	1.7	3	23	687	708	686	708	0.96
10	21	0.15	9.1	6.1	0.8	1	14	715	728	715	738	0.81
11	21	0.0028	0.17	11.6	0.9	2	23	747	768	746	769	0.94
12	21	0.00069	0.042	13.4	0.3	1	23	774	796	774	796	0.96
13	21	0.057	3.4	7.4	0.4	1	20	851	870	851	870	0.97
14	21	0.00026	0.016	14.8	0.1	1	23	889	911	889	911	0.98
15	21	0.00016	0.0098	15.4	0.5	1	23	925	947	925	947	0.97
16	21	5.3e-05	0.0032	17.0	2.7	3	23	964	985	963	985	0.95
17	21	0.005	0.3	10.7	1.5	2	23	1038	1060	1037	1060	0.93
18	21	0.007	0.42	10.3	0.3	3	23	1089	1110	1087	1110	0.92
19	21	0.0073	0.44	10.2	0.7	1	23	1119	1143	1119	1143	0.95
20	21	0.0043	0.26	11.0	1.4	1	23	1148	1171	1148	1171	0.97
21	21	0.082	4.9	6.9	0.7	2	23	1201	1223	1201	1223	0.94

Sequence Information

Coding Sequence: ATGGACGAAGTGATAGAGTTACAAAATATGGAAAACGTATGCAGGCTCTGCCTTTCCACCGACGAGCCAAAATCGTCGGTGTTCGAAGTGGAAGACTCTCCGGTATCGTTGGCCAATAAAATACAAGCGTGTTTGTCGATTCAGATTTTAACGACGGACAAATTATCGACGAAAATATGCGcgcaatgtattaaaaatgtgaATCAGTGGCATAATTATAAGGAAATATGCCTACGTTCCCAAGATAAATTGCAACAATGGTTGGAACAGAATTTACAAACAAGCCCGAtggTTGTAACAATTAAAGATGAACCTGTTGACTTGGACTTTTGTGAGGACAACATTGAAGTTATATCCGAATCTACCAATGATTCAGATTTGGAAGCTACTAATCTTGAAGAGAGTATGAATTCTTTAACGAACAATGTCCAAGTAGAATTAACagatgatgaaattaattttgagaaaaaccAATCAACTTTAACAAAAGATGTggatataagtataaaatctGAACCACAGGATTATGACACAGATTGTACTATAGAGATAGAATCTGTAACTGGTAGTGAGCTTGTTTTGAATCCTCTTTCAAACACAGAGGATAGGATTATGGAGGCTGATTCTACTCAAAAATCCAATGCATCCACATCAGCaagtaagaaaaaaaccaGAAGAGGCCCACATACCCACTTTAGAGGTGCACgtgttttcaaacaaaaatgcGTACATTGTCAAATTAATCTGCattctaaatattcttatacaaAGCACATGGAAAGATTTCACAGTGATAAACAAAATGGTACTAATCAAAAATCAGAGTtggaagatgaagaagagCTTGTTGAAGATTTAGAAGATGAATTAATGAGCATGGAAAAAGATGCTCCATTAACACAAGTGCAACAAAACATTATTAGTCAATTGAAAACTTTCATGTGTTATTCTTGCGAACAAACTTTCAACGATCGTAGAAGTACACTTTCCCATATTCGTCAACATATGCCTGATTTAAGGCCATACACGTGTATTGCGTGTTTGACAGAATTCCCAGATCGCTCGATGTATAAACAACATTGTAAAATGTCATTCGAATGTGCGATGAAGATTGCACTCGTTATACCGAATGAAGgtgaagagaaatatttcactTGTAATATGTGTTTACGTCCTATGCAGAATAGGAAACAGTTGCTTAGTCATTTATCAAAACACTCGGATAAACAATACGAGGAATTAATATCTCCTACACGATCTCCTCCTAAACTAAAACCAATAACTCCCTTACCATCTCCAaaacaagaaataatgaaGGAGCCACACaatgaaagtttaaatatacCACATCCTTACAAAAACGGCGATCCTGCGCACAATCATATATGTGATTTGTGCGGTATGATTTACAGGTACAAACCTAATATGCTAAAACACAGAGATCTTTGTCAACGTTTATCGTCTGAGGTTAGAACGTCCTACAAATGTGTTCATTGTGGCATGACGTATCTCGTGTTTAGAAAGTTTCATAGTCATATCACGGCAgatcataaaaagaaagagttcACTTGCTCTGAATGCAACAAAAAATTCAGATCTCCTAGCGATTTCTTAGAGCATCATGAGATGCATCGAATGGCGCGTAATCAAAAACAACCTCTTCAATTGAAAAGCGATTTAATGAAGCATAAACAGAATTTATCGACGTCGTTCAAAGACTGGGATAAATTCGAAGCTGAAATGAACGCAAATCAATTATCTGATAACAATCAATACAGTTGTGCACTGTGCAATCTGGAATTCTCAACTAGAGCTGAATTAACGGAACACAGGAATCTTCATTTGAAAGTGAAAATCTATTCTTGTGTTATCTGTCGTAGCATGTTCAGTAGTGCAGGTGCTTTGGAAATTCACATGAAGGATCATGGAATAGAAGACCCGAATGAgagaaatgcaaatatttcgtGTGTAGAGTACGGTACCGTGGAAGATGATTCACGAGATTCAAACTCAATGAATTTAAGTGCTATCTCGGATCCAGGgccaaaacataataattgtaaaaaatgcgGAAGACAATTCTCAAATACTGCGAATCTCAAGAGACATATAAGGAACATTCATCCGATCGAAAAACCTCCTTACAATTGTTCTCATTGTTGGCTATCATTTAAGAGCAAAGAAATCCGAGATCAGCACATTACATCCGCACATTCAAAGGCTTCGAAAACTATGCTTCGATGTCCTCAATGTCCACAGACATTTGTCTTTGAAGCCAATTTAGatcttcatttcaaaaatcatcatAAAGATTGTCGTTTCAAATGCGATATTTGCggtaaagaatttttgaaggaAGGCTCGTTGAAGATTCATAGAAGTTGGCACAATAGAGAAAATTATGGACAgagtttgaaatttatgaagaaaGAGGATCAAAAACCTTTGGTAGAacctaaaaaagaagaattcaatACGAACGTTAGTGGTCGGCCGGCTAGAGCACGAAAATCCTATCCGAATTCATCTCCGACAAAACCTAATGGCAATTTCCAATGTCAAGTTTGCAGTGATAAGTTTAATGACGTAACAGAATTGAGAAAACATTTATGGGATGTGCATTGTGCTCGTAACAAAAGCGAGAAAAGCTTTTCAGGTGATGAATTCCAATGCGAACTTTGTACGAATATTTTCCCTGATAAGGAGACGTTGAACGTACATATACAATGGCACAAGGCTCAACCCATCTTGAGTGACATTCGAAAGACCAATTTCCCTTGTGATATCTGTGGAAAACTTTACAGTTCCAAAAAGGTATTGGCGAGACACAAAAAACTTCATAAAGCGAGCTCCGTGGCTATTAGCAACTTTTCGAGCAATCAGCCTTTATGCACAATTTGTCATAAAGTATTTAACAGTAATCAGTCGTTACAGCGTCACAGGCTTAATTTGCATAGCAATATTTTCTCTCAACGACCTCAAACACAACAGTACAATAATACGAGAAGAATGTCTCAAGAAGAATCAaaacctaaaaaaataaaattagaagaagaagataaaaaaataccatTTGCTATGGATGCCATGAGCGCAGGCAGAAAGTCGGTAATGTGTCACGGctgtaaaaaattcttccctAATATGAGTGTACTGTATAAACATAAACAATTGGTACATAACAAATCTCACATGATAAGGAACATCGCGAAATCATTCACAATGGAATGTGTACCATTGCATTGCAATGATGGAAAAGTCGCATGCAACATttgctataaaaaattttccggTATACCGAATCTCCGTCAGCATTTCACTGTGAAACACAAGAATGACCGGCCCAAATATAAGTATGCTTGCTCTATAGACGGTTGCAAGCTCACCTTCCCTACACAATTGACCTTAAAGCATCACGAATTATCGCATACAGTCACTATGTTCAGCTGCTCCTTGTGCAATAGACACGTGTTTAATAGAGCGGCTATGACGAATCATATGCTGACAGTGCACAACACCGTCTACGATGCCGAGAAGAACAAGAATTTCCATAGAGAGATGGATTTGAGTAGTTACGTGGTGGAAGGTGCGGTAGATGCTACTTGCCCCCGATGTAAAGTGAAGTATCCCAACAACAAGGCTATGaagattcattatttcaaaattcacgaGGGCACGAATCAGTag
Protein Sequence: MDEVIELQNMENVCRLCLSTDEPKSSVFEVEDSPVSLANKIQACLSIQILTTDKLSTKICAQCIKNVNQWHNYKEICLRSQDKLQQWLEQNLQTSPMVVTIKDEPVDLDFCEDNIEVISESTNDSDLEATNLEESMNSLTNNVQVELTDDEINFEKNQSTLTKDVDISIKSEPQDYDTDCTIEIESVTGSELVLNPLSNTEDRIMEADSTQKSNASTSASKKKTRRGPHTHFRGARVFKQKCVHCQINLHSKYSYTKHMERFHSDKQNGTNQKSELEDEEELVEDLEDELMSMEKDAPLTQVQQNIISQLKTFMCYSCEQTFNDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYKQHCKMSFECAMKIALVIPNEGEEKYFTCNMCLRPMQNRKQLLSHLSKHSDKQYEELISPTRSPPKLKPITPLPSPKQEIMKEPHNESLNIPHPYKNGDPAHNHICDLCGMIYRYKPNMLKHRDLCQRLSSEVRTSYKCVHCGMTYLVFRKFHSHITADHKKKEFTCSECNKKFRSPSDFLEHHEMHRMARNQKQPLQLKSDLMKHKQNLSTSFKDWDKFEAEMNANQLSDNNQYSCALCNLEFSTRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANISCVEYGTVEDDSRDSNSMNLSAISDPGPKHNNCKKCGRQFSNTANLKRHIRNIHPIEKPPYNCSHCWLSFKSKEIRDQHITSAHSKASKTMLRCPQCPQTFVFEANLDLHFKNHHKDCRFKCDICGKEFLKEGSLKIHRSWHNRENYGQSLKFMKKEDQKPLVEPKKEEFNTNVSGRPARARKSYPNSSPTKPNGNFQCQVCSDKFNDVTELRKHLWDVHCARNKSEKSFSGDEFQCELCTNIFPDKETLNVHIQWHKAQPILSDIRKTNFPCDICGKLYSSKKVLARHKKLHKASSVAISNFSSNQPLCTICHKVFNSNQSLQRHRLNLHSNIFSQRPQTQQYNNTRRMSQEESKPKKIKLEEEDKKIPFAMDAMSAGRKSVMCHGCKKFFPNMSVLYKHKQLVHNKSHMIRNIAKSFTMECVPLHCNDGKVACNICYKKFSGIPNLRQHFTVKHKNDRPKYKYACSIDGCKLTFPTQLTLKHHELSHTVTMFSCSLCNRHVFNRAAMTNHMLTVHNTVYDAEKNKNFHREMDLSSYVVEGAVDATCPRCKVKYPNNKAMKIHYFKIHEGTNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00142613;
90% Identity: iTF_00142613;
80% Identity: -