Ador005557.1
Basic Information
- Insect
- Apis dorsata
- Gene Symbol
- -
- Assembly
- GCA_000469605.1
- Location
- NW:847915-851254[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.5e-06 0.00033 20.0 3.3 2 23 281 302 280 302 0.97 2 15 6.2e-05 0.0038 16.7 3.6 1 23 308 331 308 331 0.97 3 15 3e-06 0.00018 20.9 2.2 2 23 412 433 411 433 0.97 4 15 3.7e-06 0.00023 20.6 1.8 1 23 439 461 439 461 0.97 5 15 0.0001 0.0062 16.0 1.0 1 23 467 489 467 489 0.97 6 15 1.7e-07 1e-05 24.8 0.9 1 23 504 526 504 526 0.98 7 15 1e-06 6.1e-05 22.4 0.5 1 23 532 554 532 554 0.98 8 15 3.4e-06 0.0002 20.7 2.2 1 23 560 582 560 582 0.98 9 15 0.0005 0.03 13.9 0.2 1 23 588 610 588 610 0.99 10 15 2.2e-06 0.00013 21.3 0.3 1 23 616 639 616 639 0.94 11 15 1.1e-05 0.00068 19.1 1.3 1 23 645 667 645 667 0.98 12 15 0.00025 0.015 14.9 4.7 1 23 673 695 673 695 0.98 13 15 2e-06 0.00012 21.4 0.2 1 23 701 724 701 724 0.96 14 15 2.4e-06 0.00015 21.2 0.6 1 23 730 752 730 752 0.96 15 15 2.2e-06 0.00013 21.3 4.5 1 23 758 780 758 780 0.99
Sequence Information
- Coding Sequence
- ATGAGTTCACATTATATTactatggaaaaaaaattataccatAGAGGACAAATTGATGTAATAGATATGCCAATACAATTAACTTGTAATTACAAGTATTTCCTTGTTTATGAGGATCAAATATCTAGATTTGTTGTGTTAAAAGGTTTACATGGAAACACTGCAAATGAAGTAGCTATAaagttattagatatattagcTATTATTGGAGCACCACAGGTTTTACAAAGCAGCAATGGACGCAAATTTGCAGAAGAAGTTGTACAAGAGTTACGTCTTTTATGGAAAGATTTTATGATACTTCAtggagaaattattgaaaccaATGAACGTAATagagattttaaaagtttGCTTGAATGTTGGATAAAGGAAAATCCGACAAAAACATGGCATGAAGCCCTGGTACATAtacagatttttcaaaattcaacatttcgatgcgaaaatggaaaaattccttatgatatattatttggaaaaaatgtacataatgagtttcaaaaacaaactaatataataaatttaaaaaataatatatggacAGAAGAAGAATGGGTTGATCTTTTATCAGACAAACAAAATGatgttaagaaagaaaaaaagcaacaGCTTATAGAAGACTCTGCCTTTACAAacgtcaaaaatataaaaactGCAGAAGAGTGTGAAAGTGAAGATTCTTGCAATGAAGCCAGAGATGAGCTTCAAATGGACACtcctgattttaattttgtaaatgttaAAAGTGAACCTTTAAACATGCATACAGAAGATTCAATATTTGAGGATGAATTAGGAATAGACAACAGAACCAATATAgaaaatcaaatgaatttaaaatgtaaaatttgccAGAAACAATATATGAAACCTGGTCATTTAAAGAATCATATGAGAACACATATAAAGGGGAAAAAGTTTGAATGTAAATTATGTAACAAAACATTTCATGTTCTAAGTTTATATGAGAAACATATGCGGCAATctcataatcaaaataaattgtctAGTTTCaatagaaacagaaaaaatagaaattcacaAGATGAAATAACATTGACCACAAAATTATCTaagttaaaaagtttttcagatttaaatattgatggaACACAATCCAATGAAGCAAATGATTGTCCAAAagcaataaaaagtttaaatcttcttaaagaaaggaaaagaattacTGTAGACAATCgttctatgaaaataaatggagAGCCAAGTCTGAAATGTTCATAttgtaatcaaaaatttaattttcctagTGTATTAAAAAGGCATATGCGATCTCACACAAACGAAAGACcctatatttgtgaaatttgtaataaaagttttaaacaaTTAGGTCATCTTAGTCAACATTCATTAACGCACAAAGATTATCGTTCTTTTCATTGTGCGGTTTGCGGAGTGAAATTTGAATCATTGAGTTCATTAAAAATCCATACTCAATCgcataaagaaaattacattatgaAAACTAAAGAGGCTTTCCGTTTATTTGAATGTGATAATTGTAAAAAGGTATTTACCACTAAAAGTGTTTTGGAACGACACATACTTACTCATTCTCATGAACGTCAATTCCCATGCGTAATCTGTGGAAAAAGATTCAAACAAGCAGGACATGTGAAGTCTCATATGTTAGTGCATACAGGTGAACGCAAATTCGAATGTTCAATTTGTAAGAAGAGATTTAgtctttcaaattctttaaagAAACATATGTATGTACACAATGGAGAAAAACCGTATCAATGCGATGTATGTGGTGCACGATtccttgaaaaaagaaatctaaacgGACATTTAATGACTCATACAAATGAGCGTCCATTTCGCTGTAAAATTTGCGGAAAACGATACACTTTAGCAGATACTTTACGTCGACATATAAGTGCTGCACACGAAGATGGACGTACATATCAGTGTGAGATTTGTGCAAAAATGTTCAAACAACTTGCTCATTTGTCCGTTCATAAAAAAGTACACAACGATGAACGACCATTCCAATGTCATTTAtgcgaaaagaattttaaacataaaaacgtGCTTAAATCTCATTTGGCCATTCATGCAAATGTGAGGCCATTCGAATGCGATATATGCAAAGCTACATTtgtaagaaaaacaaatttacaaaCACATATTGCATCAGCTCATATGAATGAAAGACCATATGTTTGTACTATTTGTGGAAAACGATTCAAGCAGATTAGTCATTTAAATGGTCATGTAGTAGTGCATAGCAATTTAATGCCTTATCAATGCGATTTCTGTGATCGACGATGTAATAgacttgataatttaaaaaaacatatgcgtcttcatacaaaaaataaagaataa
- Protein Sequence
- MSSHYITMEKKLYHRGQIDVIDMPIQLTCNYKYFLVYEDQISRFVVLKGLHGNTANEVAIKLLDILAIIGAPQVLQSSNGRKFAEEVVQELRLLWKDFMILHGEIIETNERNRDFKSLLECWIKENPTKTWHEALVHIQIFQNSTFRCENGKIPYDILFGKNVHNEFQKQTNIINLKNNIWTEEEWVDLLSDKQNDVKKEKKQQLIEDSAFTNVKNIKTAEECESEDSCNEARDELQMDTPDFNFVNVKSEPLNMHTEDSIFEDELGIDNRTNIENQMNLKCKICQKQYMKPGHLKNHMRTHIKGKKFECKLCNKTFHVLSLYEKHMRQSHNQNKLSSFNRNRKNRNSQDEITLTTKLSKLKSFSDLNIDGTQSNEANDCPKAIKSLNLLKERKRITVDNRSMKINGEPSLKCSYCNQKFNFPSVLKRHMRSHTNERPYICEICNKSFKQLGHLSQHSLTHKDYRSFHCAVCGVKFESLSSLKIHTQSHKENYIMKTKEAFRLFECDNCKKVFTTKSVLERHILTHSHERQFPCVICGKRFKQAGHVKSHMLVHTGERKFECSICKKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDICKATFVRKTNLQTHIASAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00684907;
- 90% Identity
- iTF_00141958; iTF_00140728; iTF_00142589;
- 80% Identity
- -