Acer018422.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apis cerana
Gene Symbol
SCAND3
Assembly
GCA_029169275.1
Location
CM054911.1:15006725-15009149[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 8.7e-06 0.00098 20.0 3.3 2 23 281 302 280 302 0.97
2 15 9.8e-05 0.011 16.7 3.6 1 23 308 331 308 331 0.97
3 15 4.7e-06 0.00053 20.9 2.2 2 23 412 433 411 433 0.97
4 15 5.9e-06 0.00067 20.6 1.8 1 23 439 461 439 461 0.97
5 15 0.00016 0.018 16.0 1.0 1 23 467 489 467 489 0.97
6 15 2.7e-07 3.1e-05 24.8 0.9 1 23 504 526 504 526 0.98
7 15 1.6e-06 0.00018 22.4 0.5 1 23 532 554 532 554 0.98
8 15 5.3e-06 0.0006 20.7 2.2 1 23 560 582 560 582 0.98
9 15 0.00078 0.088 13.9 0.2 1 23 588 610 588 610 0.99
10 15 3.5e-06 0.00039 21.3 0.3 1 23 616 639 616 639 0.94
11 15 1.8e-05 0.002 19.1 1.3 1 23 645 667 645 667 0.98
12 15 0.00039 0.044 14.9 4.7 1 23 673 695 673 695 0.98
13 15 3.2e-06 0.00036 21.4 0.2 1 23 701 724 701 724 0.96
14 15 3.9e-06 0.00044 21.2 0.6 1 23 730 752 730 752 0.96
15 15 3.4e-06 0.00039 21.3 4.5 1 23 758 780 758 780 0.99

Sequence Information

Coding Sequence
ATGAGTTCACATTGTATtactatggaaaaaaaattatatcatagagGACAAATTGATGTAATAGATATGCCAATACAATTAACTTGTAATTACAAGTATTTCCTTGTTTATGAGGatcaaatatctaaatttgttGTGTTAAAAGGTTTACATGGAAACACTGCAAATGAAGTAGCTATAAAATTGTTAGATATATTGACTATTATTGGAGCACCACAGGTATTACAAAGCAACAATGGACGCAAATTTGCAGAAGAAGTTGTACAAGAGTTACGTCTTTTATGGAAAGATTTTATGATACTTCAtggagaaattattgaaacaaatgAACGTAATagagattttaaaagtttgcTTGAATGTTGGATAAAGGAAAATCCGACAAAAACATGGTATGAAGCCTTGGTACATAtacagatttttcaaaattcaacatttcgatgtgaaaatggaaaaattccttatgatatattatttggaaaaaatgttcatgatgaatttcaaaaacaaactaatataataaatttaaaaaataatatatggacAGAAGAAGAATGGGTTGATCTTTTATCAGACAAACAAAAtgatgttaaaaaagaaaaaaagcaacaGCTTATAGAAGATTCTGCCTTTACaaacatcaaaaatataaaaactGCAGAAGAGTGTGAAAGTGAAGATTCTTGCAATGAAGCCAGGGATGAGTTTCAAATGGACACTcctgattttaattttgtaaatgttaAAAGTGAACCTTTAAACATGCATACAGaagattcaatatttgaagatGAATTAGGAATAGACAACAGAATCAATAtagaaaatcaaatcaatttaaaatgtaaaatttgccAGAAACAATACATGAAACCTGGTCATTTAAAGAATCATATGAGAACACATATAAAGGGGAAAAAGTTCGAATGTAAATTATGTAACAAAACATTTCATGTTCTAAGTTTATATGAGAAACATATGAGGCAATctcataaacaaaataaattatctagtTTCAGtagaaacagaaaaaatagaaattcacaAGATGAAATAACATTGACcacaaaattatctaaattaaaaagtttttcagatttaaatattgatggaACACAATCCAATGAAGCAAATGACTGTCCAAAAgcaataaaaagtttaagtCTTcttaaagaaaggaaaagaattacTGTAGACAATCgttctatgaaaataaatggagAGCCAAGTCTGAAATGTTCATAttgtaatcaaaaatttaattttcctagTGTATTAAAAAGGCATATGAGATCTCACACAAACGAAAGACCctatatttgtgaaatttgtaataaaagttttaaacaaTTAGGTCATCTTAGTCAACATTCATTAACGCATAAAGATTATCGTTCTTTTCATTGTGCGGTTTGCGGAGTGAAATTTGAATCATTGAGTTCATTAAAAATCCATACTCAATCGCATAAAGAGAATTACATTATGAAAACTAAAGAGGCTTTCCGTTTATTTGAATGtgataattgtaaaaaggTATTTACCACTAAAAGTGTTTTGGAACGACATATACTTACTCATTCTCATGAACGTCAATTCCCATGCGTAATCTGTGGAAAAAGATTCAAACAAGCAGGACATGTGAAATCTCATATGTTGGTGCATACAGGTGAACGTAAATTTGAATGTTCAATTTGTAAGAAGAGATTTAGTCTTTCGAATTCTTTAAAGAAACATATGTATGTACACAATGGAGAAAAACCGTATCAATGCGATGTATGTGGTGCACGATtccttgaaaaaagaaatctaaatgGACATTTAATGACTCATACAAACGAGCGTCCATTTCGCTGTAAAATTTGCGGAAAACGATACACTTTGGCAGATACTTTACGTCGGCATATAAGTGCTGCACATGAAGATGGACGTACATATCAGTGTGAGATTTGTGCAAAAATGTTCAAACAACTTGCTCATTTGTCCGTTCACAAAAAAGTACACAACGATGAACGACCATTCCAATGTCATTTAtgcgaaaagaattttaaacataaaaacgTGCTTAAATCTCATTTGGCCATTCATGCGAATGTGAGGCCATTCGAATGCGATATATGCAAAGCTACATTtgtaagaaaaacaaatttacaaaCACATATTGCATCAGCTCATATGAATGAAAGACCATATGTTTGTACTATTTGTGGAAAACGATTCAAGCAGATTAGTCATTTAAATGGTCATGTAGTAGTGCATAGCAATTTAATGCCTTATCAATGCGATTTCTGTGATCGACGATGTAATAgacttgataatttaaaaaaacatatgcgTCttcatacaaaaaataaagaataa
Protein Sequence
MSSHCITMEKKLYHRGQIDVIDMPIQLTCNYKYFLVYEDQISKFVVLKGLHGNTANEVAIKLLDILTIIGAPQVLQSNNGRKFAEEVVQELRLLWKDFMILHGEIIETNERNRDFKSLLECWIKENPTKTWYEALVHIQIFQNSTFRCENGKIPYDILFGKNVHDEFQKQTNIINLKNNIWTEEEWVDLLSDKQNDVKKEKKQQLIEDSAFTNIKNIKTAEECESEDSCNEARDEFQMDTPDFNFVNVKSEPLNMHTEDSIFEDELGIDNRINIENQINLKCKICQKQYMKPGHLKNHMRTHIKGKKFECKLCNKTFHVLSLYEKHMRQSHKQNKLSSFSRNRKNRNSQDEITLTTKLSKLKSFSDLNIDGTQSNEANDCPKAIKSLSLLKERKRITVDNRSMKINGEPSLKCSYCNQKFNFPSVLKRHMRSHTNERPYICEICNKSFKQLGHLSQHSLTHKDYRSFHCAVCGVKFESLSSLKIHTQSHKENYIMKTKEAFRLFECDNCKKVFTTKSVLERHILTHSHERQFPCVICGKRFKQAGHVKSHMLVHTGERKFECSICKKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDICKATFVRKTNLQTHIASAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00684907;
90% Identity
iTF_00141344;
80% Identity
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