Basic Information

Insect: Apis cerana
Gene Symbol: Prdm15
Assembly: GCA_029169275.1
Location: CM054904.1:12172461-12175128[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00012 0.013 16.5 5.0 1 23 249 271 249 271 0.97

2 12 0.025 2.9 9.1 6.5 1 23 276 298 276 298 0.97

3 12 0.00085 0.096 13.8 1.4 3 23 309 329 308 329 0.98

4 12 0.00049 0.055 14.5 6.3 1 23 420 442 420 442 0.99

5 12 0.0032 0.37 12.0 1.9 1 23 447 471 447 471 0.90

6 12 1.1e-06 0.00013 22.8 1.0 1 23 510 533 510 533 0.96

7 12 1.9e-06 0.00021 22.1 1.1 1 23 567 589 567 589 0.98

8 12 0.00017 0.019 16.0 4.0 1 23 603 625 603 625 0.96

9 12 0.00016 0.018 16.0 4.7 1 23 631 653 631 653 0.98

10 12 0.0014 0.16 13.1 3.2 1 23 659 681 659 681 0.98

11 12 0.0001 0.011 16.7 6.6 1 23 687 709 687 709 0.97

12 12 0.00023 0.026 15.6 0.3 1 21 715 735 715 736 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00012	0.013	16.5	5.0	1	23	249	271	249	271	0.97
2	12	0.025	2.9	9.1	6.5	1	23	276	298	276	298	0.97
3	12	0.00085	0.096	13.8	1.4	3	23	309	329	308	329	0.98
4	12	0.00049	0.055	14.5	6.3	1	23	420	442	420	442	0.99
5	12	0.0032	0.37	12.0	1.9	1	23	447	471	447	471	0.90
6	12	1.1e-06	0.00013	22.8	1.0	1	23	510	533	510	533	0.96
7	12	1.9e-06	0.00021	22.1	1.1	1	23	567	589	567	589	0.98
8	12	0.00017	0.019	16.0	4.0	1	23	603	625	603	625	0.96
9	12	0.00016	0.018	16.0	4.7	1	23	631	653	631	653	0.98
10	12	0.0014	0.16	13.1	3.2	1	23	659	681	659	681	0.98
11	12	0.0001	0.011	16.7	6.6	1	23	687	709	687	709	0.97
12	12	0.00023	0.026	15.6	0.3	1	21	715	735	715	736	0.93

Sequence Information

Coding Sequence: AtggaaatcgaaaataaaacatcaattttatcaaatgataGTGGCAATGTTTGCCGCGTTTGTCTTGCAACAAATCAAAATAACCAATGCATTTTCAATgctaaacaaaataattctataaatgaaGACACAATTGATTTATCTGAAAAACTTCGTTTGTGCAGTGGTGTAGAGatattagaGAATGATGGTTTACCTTCCACTATTTGcatgaaatgtatattaaaaattaatgatgctCATGAATTAAGACAACAGTGTCAACAATCTGATATCCAATTAAGAGAATTATATGGTaaagtggaaaaaatatataatattaacttatGTAAGACAACAAtagaTCAATATTGTCAAACTGATTATTCTTTTACttctgatttaattaaaattgaaactgcAATGGGCTATAATCCTTATTCAATGATAATTGTTAATTCagatactaaaaatataaaagataatgaaatgattaatgaaTCAAAATATGTAGAAGATAAAGAATCTAAtagcaatttaaataaacaaaatggttacataaaatgtaaacaaacagaatatgaaaaaaatattacaggaAGAGAAGTTtatcgaacaaaaaaaatgacgaTGTTTAAAAGAGTAACatctatagaaaatttaaaaaatcataaagaaagacaaagacagtatataaaaaagaatacaactGTTAAATGGGATAATGATCcaacagatataaaaaaaaaagattctcaaAGTTCTCATATTTGTCCAAAATGCACAAGATGCTATTCTAGCAAAAGGTCTTTAGATAGACATATTTTGACTCatgatgaaaaaagatttacatGTGATAAATGtagcaaacatttttttcatcttgataaattgataCAGCATAGCAAATTGCATATGATTAAGGAAAAACCTAAACCAGtgttatgtaaaatatgtaatagaaattttagaaaaactgATACTATGGTAAGACATTTAAATGTTCATAAAAGAACTAATCCAAAAGAAGTTCTTTCCATTCTAAAGGaaataagagataaaagaaaattggaaaatattgaacCAGGAAAGAAGGTTTTTGAAgctgaaaataacaaaaatataaaagcaatagaagaagaatttataactaatgaaaatattattttaaatattcataaaaaaaagacattagaatctaatgataaaaaatctaattcaaatttatcatcaGATATTAGTGCTGAAAATGTTGATTCTTTCAATCATGAAACACTGTACCAATGTAACTATTGTACCAAACATTGtgcaaatgaaaaatcatttcaaaaacatatacaaattcatattgaaaaaaaatttatttgcaatgtatgtaatatgaaattttttcgtcAAGATAGATTAAATAGTCATAAGAATCGATATGGACATGATGAAAAAGCAATATCATTAGAAACACAAAAACCATGTGATGATAAATCagctattaaattaataaatagttggATTAGAGAGGAACTTGATTCGGATAATGAAGAAAAGGGTTTTCCTTGTAAAATTTGTGGAAAATCatatgatacaaaaaaatctttgttaaAACACCAATTGAGTATGCATAatgaaggaggagaagaaaactGTCTGACatgtgataaaatttgtacttgtgacgagaaaataaaaaatcaggaTAAACcaaatgaaagattaaaaccATTTCGATGTGATGAATGTAATAAAtcctttgaaaaagaaattaaattacagaAACATATAAGAATTCATGAACGTGCTAAAGAACAACaagatgtaaattttaaacgatttttatgTCATATATGTAGCAAGACTTTTAGACAAAATACAGGTCTCATGTTTCATATGAGAACACATACAGGCTATAAGCCTCATGTGTGCAAATATTGTGGAAGAGGATTCACGTCGAATTCTAATTGTATTAATCATGAAAGAACTCATACTGGTGATAGACCATTTGTTTGTCATTTCTGTAGTGCTGCTTTTGCCAAATCATGTACACTTAAAGCACATATTACAACACATACTGGAGAAGCAAATTATCATTGTAAAACGTGCGGTAAATCATTcagaagattaaaatatctgaaaGAGCATAAATTCACGCATACGGGAGAAAAACCATATGCTTGTAAAATTTGTGGTACAGCATATAGTCATTCTGGTAGTTTATTTGTACATGAGAAAAAATGTAAAGCACAATATAATAGCTATCAATCTAATTCAACACAAAGTATGCAAGCTTACTGTGAATCTGATATATCTTCACCAAGCGTGACTCCTATTATCACAGTATTACCACAAATGTATCTAAATAATACAAGTTCCATGAATACACAAAATAGCAAaagttatattgataatattcaaaagataaattctCAGAATATTACCAATGTAAATACTGTTAATACATCAGATTTACATATTCATCCAAATTCTGATATTTCTGATGTTTCTTTAGCTGTAAAAAGTTTCGCTCTTATTGGAcaaatgtttcaataa
Protein Sequence: MEIENKTSILSNDSGNVCRVCLATNQNNQCIFNAKQNNSINEDTIDLSEKLRLCSGVEILENDGLPSTICMKCILKINDAHELRQQCQQSDIQLRELYGKVEKIYNINLCKTTIDQYCQTDYSFTSDLIKIETAMGYNPYSMIIVNSDTKNIKDNEMINESKYVEDKESNSNLNKQNGYIKCKQTEYEKNITGREVYRTKKMTMFKRVTSIENLKNHKERQRQYIKKNTTVKWDNDPTDIKKKDSQSSHICPKCTRCYSSKRSLDRHILTHDEKRFTCDKCSKHFFHLDKLIQHSKLHMIKEKPKPVLCKICNRNFRKTDTMVRHLNVHKRTNPKEVLSILKEIRDKRKLENIEPGKKVFEAENNKNIKAIEEEFITNENIILNIHKKKTLESNDKKSNSNLSSDISAENVDSFNHETLYQCNYCTKHCANEKSFQKHIQIHIEKKFICNVCNMKFFRQDRLNSHKNRYGHDEKAISLETQKPCDDKSAIKLINSWIREELDSDNEEKGFPCKICGKSYDTKKSLLKHQLSMHNEGGEENCLTCDKICTCDEKIKNQDKPNERLKPFRCDECNKSFEKEIKLQKHIRIHERAKEQQDVNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHKFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNSYQSNSTQSMQAYCESDISSPSVTPIITVLPQMYLNNTSSMNTQNSKSYIDNIQKINSQNITNVNTVNTSDLHIHPNSDISDVSLAVKSFALIGQMFQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01418508;
90% Identity: iTF_00142628; iTF_00141376; iTF_00142004;
80% Identity: -