Acer015197.1
Basic Information
- Insect
- Apis cerana
- Gene Symbol
- -
- Assembly
- GCA_029169275.1
- Location
- CM054909.1:10581004-10584177[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.1e-13 1.7e-09 37.9 0.0 1 39 306 345 306 349 0.90 2 4 4.9e-12 1.3e-08 34.9 0.0 2 39 361 398 360 401 0.94 3 4 6.8e-19 1.9e-15 56.9 0.0 2 45 416 460 415 460 0.97 4 4 7.7e-19 2.1e-15 56.7 0.1 1 42 467 509 467 510 0.97
Sequence Information
- Coding Sequence
- ATGAAACCGTATCCGTTGAAACGGAAAGCCTCACTGTTGAAAACAGCCGATCAACTAAAGATCAAAGGATTGTGCGAGGTGCCTGAAAGCAGAGACGGCCCGCCCTCGGTAAGTTTGAGTTCACCGCCGAGAGAGCCTGGTACACCTAGGATAAATTTCACCAAGCTGAAGAGGCATCATCCGAGATACAAGAGGCCCAGAACGACGTTCGAACCTCGTGCCACGGATTCCAGGCATTACGATCGATACAAAGAGGAggaatcgaacgaaaattacAATTGGGAGCATAAAGAGACCCACATAGACTGGCAACCCGAAGATGAAGAGTGCACGGAGGCAACAGCGGGAGCAGTAGTCTTGGAAACTTGCCAACGCAACAGTAACAATAGTACCATTACCACCGGCAACACCAGCACCACtagcaataataacaataataacaacaataataataataacaacaacaacggcGCTAACGACAACGGCAACGgtgACATGTTTTGTCATACAGGCCTCGGACATTATGGCCATCATCCGGATCCCGGAGAGGTTGATCTACCACCTGAAACACAACCAACACCACCAAGTGCCACGTTGGTCGGCACTACGATTACCCATTTAAGAGACCCAGATCATCATTCCACAGACATTCAAAATTGTGACAgtgtaaaaatcaaatttgaaacgtTACATACGATGGATTCGTCGGACACGATCGATATTGACAGCCACATGTCGGATCGGGCGAGCGTTAGTTCAAAGAACGCGGCTGATAGTGATAATATGATGATGATCACACCGGAGTTACTTGGATTAATGCCCTCTGGGAGTTCTGTTCATTCGGATTCAGgcgaaaataattcaagaggGCATTCTGGACAATCCAGTTCTCATCACCATGGCTCAAAGTCGTGGACTCAAGAGGATATGGATGCCGCTCTGGAAGCCTTAAGAAATCACGATATGAGCCTTACGAAAGCTTCTGCAACGTTCGGTATACCCTCGACGACCTTGTGGCAAAGAGCGCATCGGCTTGGCATCGATACTCCAAAAAAGGATGGACCTACTAAATCATGGAGCGATGAAAGTTTAAACAATGCGCTTGATGCATTACGAACGGGCACAATATCGGCGAACAAAGCTTCCAAAGCGTTCGGCATACCATCGAGCACCTTGTACAAAATCGCGAGAAGAGAAGGCATCAGATTGGCTGCACCTTTCAACGCCAGTCCCACTACCTGGTCACCCGCTGATCTCGATCGCGCTCTTGAAGCGATACGTTCCGGTCAAACGTCTGTGCAAAGAGCCTCCACGGAATTTGGAATACCGACAGGAACGTTATATGGTAGATGCAAAAGAGAAGGAATAGAACTTAGTAGGAGCAATCCTACTCCATGGAGCGAAGATGCTATGACCGAAGCTCTCGAAGCTGTCagGTTAGGCCACATGAGCATTAATCAAGCAGCAATTCATTATAACCTACCGTACTCTTCTTTATACGGTCGttttaaaagaggaaaatatgAAGAACCAACAGTTGGTGAGATATCTCAAGACGGTAGCAGTCCTCATTTCCATCAAAGTCCAAGCCAAAATCATTCGTCTGCCGTACCGGATCAAATGCCGTATCAAGGCAGCTGA
- Protein Sequence
- MKPYPLKRKASLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYNWEHKETHIDWQPEDEECTEATAGAVVLETCQRNSNNSTITTGNTSTTSNNNNNNNNNNNNNNNGANDNGNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPTVGEISQDGSSPHFHQSPSQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00230773;
- 80% Identity
- -