Aaln025628.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- -
- Assembly
- GCA_963513935.1
- Location
- OY740767.1:51626369-51627640[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0091 2.9e+02 4.0 0.1 26 52 34 60 30 62 0.86 2 13 0.1 3.2e+03 0.7 0.1 22 47 58 83 55 88 0.78 3 13 0.013 4.1e+02 3.5 0.2 25 47 89 111 73 116 0.79 4 13 0.0022 70 6.0 0.1 10 48 101 139 99 145 0.76 5 13 0.15 4.7e+03 0.1 0.1 21 44 141 164 138 168 0.79 6 13 0.039 1.2e+03 2.0 0.1 23 46 171 194 165 201 0.78 7 13 0.34 1.1e+04 -1.0 0.2 24 45 200 221 193 224 0.68 8 13 0.0009 29 7.2 0.3 21 52 225 256 217 257 0.85 9 13 0.0013 43 6.7 0.1 21 50 253 282 249 285 0.86 10 13 0.23 7.2e+03 -0.5 0.1 21 30 281 290 277 305 0.82 11 13 1.3e-06 0.041 16.3 0.1 18 51 305 339 293 340 0.82 12 13 0.00071 22 7.6 0.1 22 45 338 361 335 364 0.87 13 13 1.2e-05 0.38 13.2 0.5 18 49 362 393 360 398 0.86
Sequence Information
- Coding Sequence
- ATGATCACTAATAATGAAGAACAACAAAACAAGCAGGAACCAAAATTGCCTCATGAAGAACTGATCTCAGAAGAAGTCTATTTGGAAGGAAAGGTGTTTTGTTGTGACATTTGCAATTACAGCTGTTCGAGTTCAGAGAATCTGAAAAACCATATGATAATTCACACAGGAAATAAACCGTATGTTTGCAAAGTTTGTGACTATGCGACAGCGTTACCCGCATCTCTGAAAAGGCATATGCAGATACATAACAACGATAAAACTTATAACTGTCCAATTTGTTCGTATTCATTTTTAGCTCCGGGAAAACTCAAGAGACATATGCGAGTTCATACAGGTGAGAAACCTTTTAGTTGTAATATCTGTGCTTACAAATGTGCGGCGACCGATAGTCTTAGAAAACATATGTTAAAACACTCAGGAGAGAAACCCTTCAAGTGCAGCGTCTGTGAATATTCTTGTGGGGATTCGAGCTATCTTAAGATTCATATGAGAAAACATACAGGGGAGAAGTTGTTCAGTTGTAATGTGTGTTCTTATGCTGCTTCCAGTACTTCTAATCTTAACAAACATTTGAGAATACATTCAGGAGTGAAATCTGCGAGATGTACACTTTGTGAATATGCATGTTACGATAACATTAATCTTgttaaacatatgagagtacatactggggaaaaaccgtataaatgccATATTTGTGATTATGCGTGTAAAGAATCCGGAAGACTGGGTCGACACATACGTGTTCATACGAAAGAAAAACCCCATAAATGTACTCTTTGTAAATTTAGTACTTCACAAGCCTTGAACCTTAAAAATCATATGCGAGTACATACAGGTGAAAAACCTTTTACATGCAACTTTTGTGGATATAGATTTTCTGATTCtggatattataaaatacatattcgATCGCATACAGGAGAAAAACCATATGAATGTACCAAATGTGAAGCTGCATTTCCAGATTCAAGAAATTTAAGAAAGCACATGGCAATACATAACGGAAAAAAACCTTACACTTGTGATCTTTGTGAATATTCTGGATTACAACCAAGAGACTTGAAAAGGCATATGCGTAGACATACCGGAGAAAAACCACATAGTTGTAATATTTGTGACTATTCGTGTTCAGAATCTTATAATCTGAAGAGACACATGCGAGTTCATGAAGTAGGTAAATCTAGAATTTCACGAGAGAAAGATGAATCGTCTTcttcttcatcatcatcatcgtcatcgtcatcatcatcatcgtcggtttgttaa
- Protein Sequence
- MITNNEEQQNKQEPKLPHEELISEEVYLEGKVFCCDICNYSCSSSENLKNHMIIHTGNKPYVCKVCDYATALPASLKRHMQIHNNDKTYNCPICSYSFLAPGKLKRHMRVHTGEKPFSCNICAYKCAATDSLRKHMLKHSGEKPFKCSVCEYSCGDSSYLKIHMRKHTGEKLFSCNVCSYAASSTSNLNKHLRIHSGVKSARCTLCEYACYDNINLVKHMRVHTGEKPYKCHICDYACKESGRLGRHIRVHTKEKPHKCTLCKFSTSQALNLKNHMRVHTGEKPFTCNFCGYRFSDSGYYKIHIRSHTGEKPYECTKCEAAFPDSRNLRKHMAIHNGKKPYTCDLCEYSGLQPRDLKRHMRRHTGEKPHSCNICDYSCSESYNLKRHMRVHEVGKSRISREKDESSSSSSSSSSSSSSSSSVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00139975;
- 90% Identity
- iTF_00139975;
- 80% Identity
- iTF_00139975;