Aaln032756.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- -
- Assembly
- GCA_963513935.1
- Location
- OY740768.1:53214220-53216235[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.15 1.2e+02 5.2 0.0 64 94 63 93 56 97 0.84 2 9 0.93 7.5e+02 2.7 0.0 71 94 102 125 100 130 0.92 3 9 3 2.4e+03 1.0 0.0 72 94 167 189 165 193 0.92 4 9 0.96 7.7e+02 2.6 0.0 71 94 198 221 196 225 0.92 5 9 0.96 7.7e+02 2.6 0.0 71 94 230 253 228 257 0.92 6 9 3 2.4e+03 1.0 0.0 72 94 263 285 261 289 0.92 7 9 3 2.4e+03 1.0 0.0 72 94 295 317 293 321 0.92 8 9 0.96 7.7e+02 2.6 0.0 71 94 326 349 324 353 0.92 9 9 0.91 7.3e+02 2.7 0.0 71 94 358 381 356 387 0.92
Sequence Information
- Coding Sequence
- ATGAGCAGTGAAACATATTCTTTGCTTTTTTCCAGATTAACTGAAAGATGCATTACAGAAGAGAATCATTCGTGGATCGGTGAATTAATAATACCCCAAACAACTTCTTACCTGCTTATGTACCGACCGGTTTCGTGTCTGTTACTTCGTCGCGGAAATTTCCAAGTGCAAATGTGGCCTAGCACGTTATTAACATACTTGCATAGATGCTACGAAGGCAAGATAATAGTCTGTCCTAACTCCCTGGAGTCCTTCTTACTAACAGCGTCTCGTCTTGGTTACGTTCATAACAACAGTCGTAGATGCTACGAAGGCAAGATAATAGTCTGTCCTAACTCCCTGGAGTCCTTCTTACTAACAGCGTCTCGTCTTGGTTACGTTCATAACAACAGTCGTAGACGCTACGAATACAAGATAACTGTCTGTCCTAACTCTCTAGAGTCCTTCTTACTAACAGCGTCTCGTCTTGGTTACGTTCATAACAACAGTCGTAGACGCTACGAAGGCAAGATAACAGTCTGTCCTAACTCCCTGGAGTCCTTCTTACTAACAGCGTCTCGTCTTGGTTACGTTCATAACAACAGTCGTAGATGCTACGAAGGCAAGATAATAGTCTGTCCTAACTCCCTGGAGTCCTTCTTACTAACAGCGTCTCGTCTTGGTTACGTTCATAACAACAGTCGTAGATGCTACGAAGGCAAGATAATAGTCTGTCCTAACTCCCTGGAGTCCTTCTTACTAACAGCGTCTCGTCTTGGTTACGTTCATAACAACAGTCGTAGACGCTACGAAGGCAAGATAACAGTCTGTCCTAACTCCTTGGAGTCCTTCTTACTAACAGCGTCTCGTCTTGGCTACGTTCATAACAACAGTCGTAGACGCTACGAAGGCAAGATAACAGTCTGTCCTAACTCCCTGGAGTCCTTCTTACTAACAGCGTCTCGTCTTGGTTACGTTCATAACAACAGTCGTAGATGCTACGAAGGCAAGATAATAGTCTGTCCTAACTCCCTGGAGTCCTTCTTACTAACAGCGTCTCGTCTTGGTTACGTTCATAACAACAGTCGTAGATGCTACGAAGGCAAGATAATAGTCTGTCCTAACTCCCTGGAGTCCTTCCTACTAACAGCGTCTCGTCTTGGCTACGTTCATAACAACAGTCTTAGACGCTACGAAGTCAAGATAACAGTCTGTCCTAACTCCCAGGAGTCCTTCTTACTAACAGCGTCTTTTATGTGA
- Protein Sequence
- MSSETYSLLFSRLTERCITEENHSWIGELIIPQTTSYLLMYRPVSCLLLRRGNFQVQMWPSTLLTYLHRCYEGKIIVCPNSLESFLLTASRLGYVHNNSRRCYEGKIIVCPNSLESFLLTASRLGYVHNNSRRRYEYKITVCPNSLESFLLTASRLGYVHNNSRRRYEGKITVCPNSLESFLLTASRLGYVHNNSRRCYEGKIIVCPNSLESFLLTASRLGYVHNNSRRCYEGKIIVCPNSLESFLLTASRLGYVHNNSRRRYEGKITVCPNSLESFLLTASRLGYVHNNSRRRYEGKITVCPNSLESFLLTASRLGYVHNNSRRCYEGKIIVCPNSLESFLLTASRLGYVHNNSRRCYEGKIIVCPNSLESFLLTASRLGYVHNNSLRRYEVKITVCPNSQESFLLTASFM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -