Aaln060818.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- PHF20L1
- Assembly
- GCA_963513935.1
- Location
- OY740773.1:1578116-1620964[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2 1.1e+04 -1.6 0.1 22 39 412 427 408 432 0.74 2 2 1.8e-13 1.7e-09 39.5 0.2 9 72 468 526 464 530 0.87
Sequence Information
- Coding Sequence
- ATGGAGTCTGCAGGTGTTATGGGTACTTTGAGTGTTGAAAATCAAAAATACAGATCAACACAAATGGCTAAAAATCAAGAGATAATGAAGTGGGAATCTTGTGGAAGAAGATCATCAAGTGAAATGCGAAAAAATATCTCATGGGGTTCCAAGAACGATACAGATTCAGATTCTGACTCTTTAGTACTTGTGAAAATGAAGAAGTTAGGAAGACCAAGGAAGTTAGGTCCAAAGAAGGCGACTGTGACTAAAGAACTTCCACCTCAACATATGTCTGATGAGGATCTTCATTCACCAGACGAGCATAGTGATTCAAGTTTTAAGAAAAGTAGTGCTGAGGATGAAATTGATGATAAACAGTTTAGTCCTGGGAGTATTTTAGAAGTTATGGATTTCAATGAACAATGGTACCCTGTAAAGGTATTAGAAGTTGATTATGAAGAAAACGAGGTACTTGTGCATTACCAAAAATGGTCAGACCGATATGATGAATGGGTCCGAATGGACAGCAACAGGATTCGCCGTCCTAGTCCAGCCAGTTCCAGTTTACGACACAACTTCAAAGTTGGTGAGAAAGTAATGGCAACTTGGTCGTACAGTTTGAAGTTTCCAGCTGTTATAAAAGCATTGCATGATGATGATAAGGTTGATGTATTATTTTACGATGGTTTTGCAAAAACGTTGAGAAGCTGCAAACTGTCAAAAGCTAATGAACAAGATCTTAAAAATATGTCTgCTCCACGAGTTTACAAAGTTGCACCGCCTATTGGTTCTGATCCTGTTGAAACTGATCTGTGTTCAAAAGAAGAGCGAAGAGAAAGAAAGCGTAAAATTAATATTCTCGAAGTATTCCACCCACagttaaataaaaagagaaaaactgCAGGGATCCAAACAAAAGTAGAAGTGAAGAAACGAAAAAGACGGCGTTTTGCAAAACCTACGGCAACTATAAGTTTGAAGAAAGCAAGTGGAGTAGGTATTGCAGATCGTAAAGAGACAACGATAACTATAAAAGTTGAAAAACAGATTAAAGAAATTAGGAATGAAGTGAAAAATAATGACCCAGACATTAGTAAAACAAGTGTAAAACTAGAGACTCAAGAGGTAGAAGATAAAGAGCAAAAACCAGCTGTAAATGAAAACCTGCCAATCTCAAGTAATGTTGATTTTGAAGGTGATGCTGATGAGTCTACTCTGGTTATAGATGAAATACCTGAACAGGGAAGAAGAAGACGAAAAAAACGAAAGAAGaaagacATATCTTTTGTAGTTCCTCAAAAACGTAGGACACAAGATGAAGATGATCCTCGTTGGGATACTGATATTCCTGCAGGAGCAACTCCTTTCAAATTTGAAGCGTCAGATGGATCTGCAAGAGAATCTATTATAATACCTGACAAGAAGTTACCTGAAGGTTGGGCGAAACATACAATGCTTAGGAAAAACAGCTCTAAATGGGATGTTTTTCTTGTTAACCCTGAAGGTCGTAAATTTAGATCTCGAAATGAACTCCGAacttattataatgaaattaagGAGCCTTATCCAGAGgatcattttgattttgttgtggGACGAAAACAGCAGCTTATTGAAGACAGCAAAAACAAATCCAAAACCATTTCaCCATTGCCTCCTAAACCTTCAACATCGTCTACTGCTTTGCCTGCAGAAGTGAAGCGGATTAAAACTTTGTTACCAAAAAGTAAGCCTTTAGAGAATGAAGACAAAAGGGCAGTACCTCCAGCAGTTCCGGACGTTTCATCGCCATTACCCCTTCCTATGGAGTCATTACCTGTTACACCTGTACTTCCACCATTAAATATGAGTGTGTCATCACCAGGACAAGAAGGTTTTACCTGTCCTATAGATGGTTGTGGTAAAAACTTcagaaaagaaaatttgttacAGATGCATATCAAACATTACCACCAAGAATACAGTAACTTGGTCGGATCCACTCCCAATGTAGCAGATTTAGCTTATGCTCGGACTACAGGAGAACCTTTAGAAGACTCCCGAGCTGAGATGGCGTTAAATGGGACTTCATTTATAGATAGGATCAATCGTTTTGAAGCAGAACGTAAAGCTCGAGCGAGTGATGGTGTGCAAGCGTGGAATGTGTCTGCTGCCAAGAAACATGCTCTTAGAGAGTCACCAATACCGATGAACCCAAAGACTCCAGAAAGAGAAGCACTAGAAATAGCAGCACCTGAACCTCTAATGGTGGATGTTGGAGATGCTGATATTTCTTCATCAAGTATTGATTCTCCCGTTGTTGCAAGTCAAGTTTCTCCTAAGATGCCACCATCTTTGTCAACATTGTCAGTTCCGCCGCAGTCAGATGGAAATGTGTTGGATACAATTCCAAGTGAAGAACTAGCTCAACAAGTTTTTACAGAAATGTCTACCTCAACGAAAGGACATTCGACTTCAGGGAAAGAAGAGAAAAGTTCAACGATAAAAACCATATTACCTCTAAGACAACCTGTTCAAAATTCAGTTGAAATGATGGAGCTTATAATGGAAGAAGAGAGTGATGAAGATATGTTACATTATTCCACCTCCCCATCCAATAAGAGTTCTCAGAAAATACTCAAAAGTGAAGATTATCCTTCTGTAACACCAAAGAAAATGAAACCGGGTTAG
- Protein Sequence
- MESAGVMGTLSVENQKYRSTQMAKNQEIMKWESCGRRSSSEMRKNISWGSKNDTDSDSDSLVLVKMKKLGRPRKLGPKKATVTKELPPQHMSDEDLHSPDEHSDSSFKKSSAEDEIDDKQFSPGSILEVMDFNEQWYPVKVLEVDYEENEVLVHYQKWSDRYDEWVRMDSNRIRRPSPASSSLRHNFKVGEKVMATWSYSLKFPAVIKALHDDDKVDVLFYDGFAKTLRSCKLSKANEQDLKNMSAPRVYKVAPPIGSDPVETDLCSKEERRERKRKINILEVFHPQLNKKRKTAGIQTKVEVKKRKRRRFAKPTATISLKKASGVGIADRKETTITIKVEKQIKEIRNEVKNNDPDISKTSVKLETQEVEDKEQKPAVNENLPISSNVDFEGDADESTLVIDEIPEQGRRRRKKRKKKDISFVVPQKRRTQDEDDPRWDTDIPAGATPFKFEASDGSARESIIIPDKKLPEGWAKHTMLRKNSSKWDVFLVNPEGRKFRSRNELRTYYNEIKEPYPEDHFDFVVGRKQQLIEDSKNKSKTISPLPPKPSTSSTALPAEVKRIKTLLPKSKPLENEDKRAVPPAVPDVSSPLPLPMESLPVTPVLPPLNMSVSSPGQEGFTCPIDGCGKNFRKENLLQMHIKHYHQEYSNLVGSTPNVADLAYARTTGEPLEDSRAEMALNGTSFIDRINRFEAERKARASDGVQAWNVSAAKKHALRESPIPMNPKTPEREALEIAAPEPLMVDVGDADISSSSIDSPVVASQVSPKMPPSLSTLSVPPQSDGNVLDTIPSEELAQQVFTEMSTSTKGHSTSGKEEKSSTIKTILPLRQPVQNSVEMMELIMEEESDEDMLHYSTSPSNKSSQKILKSEDYPSVTPKKMKPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -