Aaln081488.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963513935.1
- Location
- OY740776.1:40883233-40913757[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-109 2.6e-104 351.1 33.2 1 300 14 318 14 318 0.94 2 2 0.026 2.4e+03 -0.1 6.3 122 172 318 368 316 392 0.61
Sequence Information
- Coding Sequence
- ATGAAGGAACATTTCATACAGCAGCTGTCGAACTTGAAGGCCGAGGCTCGCTTGGCAGCCAAGAGGCAGGCGAGAGCTGAGGCTCGGGAGATCAGGATGCGAGAGTTGGAGAAGCAGCAAAGAGAAGCTGAAGAAAACTCTGATAAAGTGTACGACATGTATTCGACACCAGACGCCGTGAATAGAACTGTGCGAGCAGTGTCTGTAGCAAGCCCTCGTTCATCTTCTCTACTCTCTAACAACAGCTACCATTCTTCTAGACGAAGTTCAGAGGACTCGTTGGAAGAAGGCACTGGTTTACGAGACATGAGACACGAGTTGAAGGAGTTGGAAGAAAAGTTTCGTAAAGCTATGATAGCGAATGCACAGCTAGACAATGAGAAGGCTGCCGTAGCTTACCAGGTAGAATTGCACAAAGACAGATATGAGGAACTGGAAGAGCAGCATCTTCAGCTGCAGAGAGAGCACAAAGAAAAGTGTCGTCAGTTTGAACAGTTGAAACGAGTTACTGCCAAACTTCAGGAAGACTTGACTTGTTGCGTCGCACAACTAGAGGAGCGAGATAGGCTTATACAAGAACAAGGTTTAGTCATTGTCAGCGGAGACTGTTCCTCATCAGAAGAGGACAGTAGTGAAAGTGGTACCAAGGAGAAGGTGAAGAAGTTGCCTAAGAGAGCGTTAGTCTCAGCGCAGGTCGCTGGGGTCTTGGAGAGTGGCGAAGGTTCTTTAGATGTACGGTTGAAAAAATTCTTGGAAGAGAGAAATGAGCTGATGGATGAGTTGAGACACGTCAAATTGGAGTTGGAAGAAGAAAGATCAAGATCACGAGGCAACCGAGTGAACAGTGTTAATGGCCCACACTCCGACGATGTTGAAGATATACAAAGAGAAGCAAACAAATTATTAGgggattataaatttaaactgcaGAAAGCGGAACAAGACGTCTCAACTTTGCAGGCCAATGTTGCTAGGTTAGAAAGTCAAGTGGTACGATATAAATCTGCCGCAGAAACAGCCGAGAAAGTAGAAGacgaattaaaattagaaaaaagaaaGCTTCAAAGAGAGTTAAGAGAAGCGCAAGCAAGAGTCGAAGAGTTGGAAACGGCACATTCACATCTACAGCGACGATTAGACAAACTAAAGAATGCGAAATCTGCTTTACTGAAGGATTTGTAA
- Protein Sequence
- MKEHFIQQLSNLKAEARLAAKRQARAEAREIRMRELEKQQREAEENSDKVYDMYSTPDAVNRTVRAVSVASPRSSSLLSNNSYHSSRRSSEDSLEEGTGLRDMRHELKELEEKFRKAMIANAQLDNEKAAVAYQVELHKDRYEELEEQHLQLQREHKEKCRQFEQLKRVTAKLQEDLTCCVAQLEERDRLIQEQGLVIVSGDCSSSEEDSSESGTKEKVKKLPKRALVSAQVAGVLESGEGSLDVRLKKFLEERNELMDELRHVKLELEEERSRSRGNRVNSVNGPHSDDVEDIQREANKLLGDYKFKLQKAEQDVSTLQANVARLESQVVRYKSAAETAEKVEDELKLEKRKLQRELREAQARVEELETAHSHLQRRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -