Aaln015656.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- -
- Assembly
- GCA_963513935.1
- Location
- OY740766.1:20933423-20934373[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-09 5.7e-07 31.5 0.0 1 40 18 58 18 61 0.92
Sequence Information
- Coding Sequence
- atgGTTCGAGTGTACAAACGAAAACTTGGTGCTCGACGCTATGCAGATTATTCACCAGAGCAGTTAGAGGAATGTTTGCAAGCAATAAGGGATGGTTCATACAGCCATCGTCGAGCTGCAGAACACTTTAATATACCTAGAcgaactattttaaacaaactgaaacAGAAGCATAGTAAACAAGTAGGGAAACCTACAATATTTTCCAGAGATGAGGAGGAATCTTTTGTTTCGTACATAGAAACATTGAGTGATTTTGGCTTCCCAATAACTACGGAAGATCTCAGGAATGCCGTCAAAATTTACTTAGAGAGAACTAGTCGTGTCGTTGAAGAATTTCAAGGGAACAAGCCTGGCCTTGAGTGGCTAAAACATTTCTTGATGCGTTACCCAAGATTGAAAGAGCGCATAGCATCCAACATAAAGAGAAGTCGAGCTGCAGTTACCGAAGATATCCTTCaggattatattaaaaacttgcAAGAAGTTATCAAAGATGTACCTCCTGAAAATATTTGGAATCTAGACGAGACCAATTTGGCAGATGACCCTTCAAAGAAGAAAGTTATTTGTCGCCGTGGCACAAAATATCCTGAAAAACTGTGTAATTTTTCCAAATCAAGCACCTCTATTATGATTTGCGGCAGTGCGGCTGGTGAAATATTGCCACCCTTTGTTGTGTACAAAGGTACCCAGATGTGGGACGTTTGGACCGAAGGTGGTCCAAAAAACACTCGCTATTTTAGCACAAAGTCTGGGTGGTTTGATGGACCAGCCTTTAATGAATGGTTTGAGAGTTTGTGCCTGCCACGACTTAAGAAAGTGGTAGGAAAAACAGTTGTGGTTGCGGATAACTTATCCAGTCACTTAAATGTCGTTATTTTTGAGAAGTGTAGAGAAAATAATATCAGTTTTGTATGTCTCCCCCCTAACAGTACTCATTTAACGTAA
- Protein Sequence
- MVRVYKRKLGARRYADYSPEQLEECLQAIRDGSYSHRRAAEHFNIPRRTILNKLKQKHSKQVGKPTIFSRDEEESFVSYIETLSDFGFPITTEDLRNAVKIYLERTSRVVEEFQGNKPGLEWLKHFLMRYPRLKERIASNIKRSRAAVTEDILQDYIKNLQEVIKDVPPENIWNLDETNLADDPSKKKVICRRGTKYPEKLCNFSKSSTSIMICGSAAGEILPPFVVYKGTQMWDVWTEGGPKNTRYFSTKSGWFDGPAFNEWFESLCLPRLKKVVGKTVVVADNLSSHLNVVIFEKCRENNISFVCLPPNSTHLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00998518;
- 90% Identity
- iTF_00139342;
- 80% Identity
- -