Aaln028949.1
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- -
- Assembly
- GCA_963513935.1
- Location
- OY740767.1:115679768-115682535[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-09 4.1e-07 31.9 0.0 2 43 12 53 11 55 0.94
Sequence Information
- Coding Sequence
- ATGGCAAAGAGGGGAAATTACGGAAAGTGGTCACAAGATGATTTACAAAGAGCGGTAGATGCTTACAGAAATGGCGATTTTGGATTAAACGAGTGTGGGAGAATTTACGGAGTGCCTAAAGGAACAATAAAAAGACACGCGGATGGAAAAAACTCTGTAGCAAATGAGATTAAGTTATTGGGAAGacaaccaacttttgatcatgaAATGCAAGAAGTTCTAAGAAACCATTTGTTAATGTTCGAACAGATGTTTTATGGATTTActactttagaatttagaaaGCTAGCTTTTGAAGTAGCAGAAAAATATGGGCTTCCTCATAgttttaacaaggaaaaaaagtgTGCTGGAAAGAAATGGTACTATAATTTTATGCGTAATAACCCTCAACTTAGCCTTCGTAGGCCAGAAGCTACATCACTGGCCCGAGTTAAAGGGTTCAATAAAGATAATGTCATgcacttttttgatatcttagaGAAAACTGTCAAGGACAACAACATAAATGCAAACACCATATTTAATGTTGATGAATCAGGATAttcaacagtgcaaaaacatatgCAAAAGGTAATAGCGAAGAAGGGCAAGAAACAAGTTGGGGGTGTAACAAGTGGTGAAAGAGGGATTAATACAACTATGGTATGTGCTGTTAGTGCTTCAGGTATCTATGTTCCacctatgattatttttaagaGGAAGATATGGTTGGAAGATCTGAGATTCGGTGCCCCCTTGGGAAGCATAGTAAAAATATCTGATTCTGGATACATTAACTCAGATCTTTTCTTTGAGTGGCTTAGGCACTTTCATAGTTTTGTCAGTTCTACAAAGACAAATAAAGTTCTTTTACTGTTAGATGGCCACACGACACATTGCAAAAACCTAGAAGCTCTAGAATACGCTAGAGAGAATGGAATCATCCTTTTACAGCTCCCTGGACACACATCACATAGGTTGCAGCCATTGGATGTTGCGTTTTTTGGACCTCTCCAAAAATACTTTGTTCAGGCCCAAGATGCTTTTTTAAGAGAGTACAAGGCAGATAAGGTAACTCAGctacaaatatcaaaacttttaaatgaagctTACGGAAAAGCTGCCACTGTAGGTAATGCTGCAAGTTCGTTTAGGGCAAGTGGATGTTGGCCTGTAAACAGGAACGTGTTTAGAGATTGTGATTTCGCTGGTGCAAGTGCTTTACAACCAGAAAACCAGATATTGCCCCCTTCTGAAGTTTCTGAACCACAAACACCAGAGCCAGGCACAAGTAAGACACACAACTATATccagaatatttccaaaaacacttCCTCGACAAGTTCTGAATTGGACGACACTGACGAAGATAGTGACTATGAACCTgcatctaaaaaagtttcatttagagAAACTCTGCTGAAAGTATCTCCATTACCAAAAAGAAACTTGTTTCAAGCAGTCTCGAGAGGACGTGGACAAGGCCGAGGTAGAGGATGTGGAGCTCAAAAGGCTGTTGTTATTACAAGCAGTCCTTATAAACTGgctttggaagagaaaaaaactatggcaaaggagaaagaagagagaaaaagGGAACGTATTGAGAAGAGAAGTGAAAAGTTAAATAAGAACACAGGAGTTGTGAAAAAAGTGGGaagaggaaatattaaaaaggaaaccAGTTGGTACTGCTATATTTGTGATGAAGCGTCTCATGAAGATATGATTCAGTGCATTAAGTGCCATACTTGGGTGCATACGATTTGCGCAGgagaggtggaaaatcttcaaaagacaaagggagacatcgATCGAGAAGATATAAGTAGAGAGCAGAATTTTATGTACCGCGCGAAGAGCGAGGCAAATCACTGCTGGAGCAGAGGTCCAGGGATGGATAACCTCATGACAGATCGTGCAGGATCCCTGGttggagtgttgtgtaggtga
- Protein Sequence
- MAKRGNYGKWSQDDLQRAVDAYRNGDFGLNECGRIYGVPKGTIKRHADGKNSVANEIKLLGRQPTFDHEMQEVLRNHLLMFEQMFYGFTTLEFRKLAFEVAEKYGLPHSFNKEKKCAGKKWYYNFMRNNPQLSLRRPEATSLARVKGFNKDNVMHFFDILEKTVKDNNINANTIFNVDESGYSTVQKHMQKVIAKKGKKQVGGVTSGERGINTTMVCAVSASGIYVPPMIIFKRKIWLEDLRFGAPLGSIVKISDSGYINSDLFFEWLRHFHSFVSSTKTNKVLLLLDGHTTHCKNLEALEYARENGIILLQLPGHTSHRLQPLDVAFFGPLQKYFVQAQDAFLREYKADKVTQLQISKLLNEAYGKAATVGNAASSFRASGCWPVNRNVFRDCDFAGASALQPENQILPPSEVSEPQTPEPGTSKTHNYIQNISKNTSSTSSELDDTDEDSDYEPASKKVSFRETLLKVSPLPKRNLFQAVSRGRGQGRGRGCGAQKAVVITSSPYKLALEEKKTMAKEKEERKRERIEKRSEKLNKNTGVVKKVGRGNIKKETSWYCYICDEASHEDMIQCIKCHTWVHTICAGEVENLQKTKGDIDREDISREQNFMYRAKSEANHCWSRGPGMDNLMTDRAGSLVGVLCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00139232;
- 90% Identity
- iTF_00139288; iTF_00139277; iTF_00139233; iTF_00139265; iTF_00139266; iTF_00139267; iTF_00139236; iTF_00139268; iTF_00139237; iTF_00139269; iTF_00139238; iTF_00139270; iTF_00139239; iTF_00139271; iTF_00139240; iTF_00139241; iTF_00139242; iTF_00139243; iTF_00139244; iTF_00139245; iTF_00139246; iTF_00139247; iTF_00139248; iTF_00139249; iTF_00139250; iTF_00139251; iTF_00139252; iTF_00139253; iTF_00139254; iTF_00139255; iTF_00139256; iTF_00139257; iTF_00139258; iTF_00139259; iTF_00139260; iTF_00139261; iTF_00139262; iTF_00139263; iTF_00139264; iTF_00139234; iTF_00139235; iTF_00139232;
- 80% Identity
- iTF_00139277;