Aaln049101.2
Basic Information
- Insect
- Aphrophora alni
- Gene Symbol
- retn
- Assembly
- GCA_963513935.1
- Location
- OY740770.1:97880837-97899349[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-20 2e-16 62.5 0.0 16 89 9 80 4 80 0.95 2 2 1 1.6e+04 -1.3 0.0 23 38 207 224 171 226 0.65
Sequence Information
- Coding Sequence
- ATGAACTCTGAACTGTCACTAGTATCTGGGACACCAATCAACCGACTTCCTATCATGGCTAAGTCAGTGTTGGATCTGTATGAACTTTACAATCTTGTCATCCAAAGAGGAGGTTTGGTAGATGTCATTAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGTTACATTTGCCATCGTCCATCACATCGGCTGCTTTTACCCTGAGAACGCAatatatgaaatatttataccCATATGAATGTGACAAACGACGATTAAGTACGCCAGGTGAACTCCAAGCCGCGATTGACGGTAATAGAAGAGAAGGACGACGCGGGAGTTATGGAACTTATGCAGAAATGATGCAGCGAAGTCCTTCGCAAATGTCGCCTCTAAGTTTAGTGACAGCAACACGCCCACAATTGAATGGCAGCAGCGGAAACCATCATCTCTCAAATAATAATCACCTTCCCCATCACCAGTCTCTAGTTCCGCCTGGCATTGcagGACCCGTAGTCGGAGCACAATTTGAGGCAAGAATGGTTGAATATGTCAAAATGTTAAATAAGGAACTTCGTACAACTACAGCCACCCCACCTATTCACAGACAAAcATCACCGCCTTCATCACCACAAGAATCTCCATTAAACTCATTTGACATGTCTCGATTAACATTATGGAATCTTTACCACAACCAACCTTCGCCACCAGAACCTCAGAAAGAGCCAATAAACCTGGAGAAACGTGAAGACCCTGTTGGGCCTCCACCTGCTAAACGTCATCTTCCTGATGCTGAAGATATTAAAATGACAGGCACACACATCAAGATCTCAAGTAGAAATGATGGTCGTGGTGGAGGTGATAACTCACTCGTAGTCAGTATGGATATCAACGGCACCATGTACCAGGGAGTGTTATTCGCCCAAAGTACATCGCGTTTACCATCGTGA
- Protein Sequence
- MNSELSLVSGTPINRLPIMAKSVLDLYELYNLVIQRGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECDKRRLSTPGELQAAIDGNRREGRRGSYGTYAEMMQRSPSQMSPLSLVTATRPQLNGSSGNHHLSNNNHLPHHQSLVPPGIAGPVVGAQFEARMVEYVKMLNKELRTTTATPPIHRQTSPPSSPQESPLNSFDMSRLTLWNLYHNQPSPPEPQKEPINLEKREDPVGPPPAKRHLPDAEDIKMTGTHIKISSRNDGRGGGDNSLVVSMDINGTMYQGVLFAQSTSRLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00808060;
- 90% Identity
- -
- 80% Identity
- -