Asti007510.1
Basic Information
- Insect
- Aphodius sticticus
- Gene Symbol
- -
- Assembly
- GCA_963966075.1
- Location
- OZ014506.1:80997630-81005943[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0073 73 5.0 0.0 17 44 128 155 113 160 0.77 2 5 0.04 4e+02 2.7 0.1 25 47 164 186 158 191 0.82 3 5 0.0012 12 7.5 0.1 21 52 188 219 185 221 0.88 4 5 0.06 6e+02 2.1 0.3 21 43 216 238 212 245 0.88 5 5 1.6e-06 0.016 16.8 0.1 23 52 246 275 241 277 0.91
Sequence Information
- Coding Sequence
- ATGTCAGTAGATGAAGTGATGGTGCGTGTTGAGTCGGATACTCTTCTAGAAGAAAACTATACATTGTTACCATATATAAAAGTAGAAGACGACAACATGATGATATTGCATAGTGAAAGTTACAAGGAAGATACATCAGCAGAAGCCGTTCTTTGCGTTCCTATTGCTGACACATTATTCGATTGCAATATTGATGGTTCCCTTATAGAACAACAGACTGAGTGCGAAGATTTTCTAAATGAGCACAACTATAATACTTCCGACGAGAACAACACTATGAATATGTACTGGGCCGATACACCAAAGAAAGAGAAtgttaatttAAAGTGTACGTTCTGCCAGAAAATAATGAAGACCCCTGGTGGGTTCTATCGCCATTTACGTACGCACACCGGAGAAAAGCCTTTCCAATGTCAACTATGCGATAAGAAATTCTCACAACAAAGCAATTTATGGAAGCATGTGCTAATTCATACGGGTGAAAGGAGGTTTGAGTGTCCGCATTGCAGTAAGAAATTCTCCCAGAGGGCAAACATGCAAAAGCACATGATGGTGCATACGGGGGAGAAGCCGTTCCACTGTGCGGTATGCGACAGAACGTTCACGCAACGTGCCAacttaaataaacatattagAATTCATACAGgaGAAAAACCATACAGttgtaagtattgtaatcgacaGTTTGCACAACAATCAAACATGCAAAAGCACGAGATGATTCATGAAGGTTTGAAGCCGTTTACTTGCACGATATGTACATCGGCATTTACACAACAGAGCAATCTTAAGAAGCATATGGAAATCCATACATCACCGAAACCAAAGTCGCCAAAATCGGATACTCTGTATAGCTGCAATGCTTGCTTGAAAGGTTATAAAAGTCTGGATGGTCTGTATAAACATATGGCGGTCTGTCCTCATATAGAAAATGCAAATATAGTAATAGAAATGGATGAAAACGAAGATAGTGATAATGCAGGAGAGATTTATATTGACGTTACTAGTACTgaagaaacaaacaaagaattacCGATTATGCGGAATTCTCAAGAACTTTGGCTTCAGAATGTGATTGTTAGCAATGATATGTTTATTAATGAACACAACAGGAATTGTACATAA
- Protein Sequence
- MSVDEVMVRVESDTLLEENYTLLPYIKVEDDNMMILHSESYKEDTSAEAVLCVPIADTLFDCNIDGSLIEQQTECEDFLNEHNYNTSDENNTMNMYWADTPKKENVNLKCTFCQKIMKTPGGFYRHLRTHTGEKPFQCQLCDKKFSQQSNLWKHVLIHTGERRFECPHCSKKFSQRANMQKHMMVHTGEKPFHCAVCDRTFTQRANLNKHIRIHTGEKPYSCKYCNRQFAQQSNMQKHEMIHEGLKPFTCTICTSAFTQQSNLKKHMEIHTSPKPKSPKSDTLYSCNACLKGYKSLDGLYKHMAVCPHIENANIVIEMDENEDSDNAGEIYIDVTSTEETNKELPIMRNSQELWLQNVIVSNDMFINEHNRNCT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00137303;
- 90% Identity
- iTF_00981518;
- 80% Identity
- iTF_00138412;