Basic Information

Insect: Aphodius sticticus
Gene Symbol: -
Assembly: GCA_963966075.1
Location: OZ014512.1:45173179-45176397[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.88 68 5.6 1.3 1 23 166 188 166 188 0.87

2 21 5.8 4.4e+02 3.1 2.5 1 23 223 245 223 245 0.95

3 21 0.39 30 6.7 2.7 1 23 250 272 250 272 0.87

4 21 6.4 4.9e+02 2.9 0.7 1 23 399 421 399 421 0.97

5 21 7.6 5.8e+02 2.7 0.2 2 23 428 450 427 450 0.87

6 21 0.00023 0.018 16.9 0.7 1 23 525 547 525 547 0.98

7 21 0.059 4.5 9.3 0.2 2 23 566 587 565 587 0.92

8 21 0.092 7.1 8.7 0.1 2 23 596 617 595 617 0.91

9 21 0.12 9.5 8.3 0.2 2 21 649 668 648 669 0.94

10 21 0.9 69 5.6 1.0 1 23 674 696 674 696 0.96

11 21 2.9 2.2e+02 4.0 0.4 2 23 704 725 703 725 0.92

12 21 3e-05 0.0023 19.7 1.8 2 23 732 753 731 753 0.97

13 21 0.3 23 7.1 5.2 1 21 765 785 765 786 0.94

14 21 0.00024 0.018 16.9 1.5 2 23 792 813 792 813 0.98

15 21 0.82 63 5.7 2.2 1 23 821 843 821 843 0.98

16 21 0.27 21 7.2 1.0 3 23 851 872 850 872 0.97

17 21 0.14 11 8.1 0.3 2 21 874 893 873 894 0.95

18 21 0.0018 0.14 14.1 3.1 1 23 932 954 932 954 0.94

19 21 1.6 1.2e+02 4.8 3.9 2 23 961 982 960 982 0.92

20 21 0.037 2.9 9.9 0.0 1 20 984 1003 984 1005 0.95

21 21 0.023 1.7 10.6 0.5 2 21 1026 1045 1025 1046 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.88	68	5.6	1.3	1	23	166	188	166	188	0.87
2	21	5.8	4.4e+02	3.1	2.5	1	23	223	245	223	245	0.95
3	21	0.39	30	6.7	2.7	1	23	250	272	250	272	0.87
4	21	6.4	4.9e+02	2.9	0.7	1	23	399	421	399	421	0.97
5	21	7.6	5.8e+02	2.7	0.2	2	23	428	450	427	450	0.87
6	21	0.00023	0.018	16.9	0.7	1	23	525	547	525	547	0.98
7	21	0.059	4.5	9.3	0.2	2	23	566	587	565	587	0.92
8	21	0.092	7.1	8.7	0.1	2	23	596	617	595	617	0.91
9	21	0.12	9.5	8.3	0.2	2	21	649	668	648	669	0.94
10	21	0.9	69	5.6	1.0	1	23	674	696	674	696	0.96
11	21	2.9	2.2e+02	4.0	0.4	2	23	704	725	703	725	0.92
12	21	3e-05	0.0023	19.7	1.8	2	23	732	753	731	753	0.97
13	21	0.3	23	7.1	5.2	1	21	765	785	765	786	0.94
14	21	0.00024	0.018	16.9	1.5	2	23	792	813	792	813	0.98
15	21	0.82	63	5.7	2.2	1	23	821	843	821	843	0.98
16	21	0.27	21	7.2	1.0	3	23	851	872	850	872	0.97
17	21	0.14	11	8.1	0.3	2	21	874	893	873	894	0.95
18	21	0.0018	0.14	14.1	3.1	1	23	932	954	932	954	0.94
19	21	1.6	1.2e+02	4.8	3.9	2	23	961	982	960	982	0.92
20	21	0.037	2.9	9.9	0.0	1	20	984	1003	984	1005	0.95
21	21	0.023	1.7	10.6	0.5	2	21	1026	1045	1025	1046	0.92

Sequence Information

Coding Sequence: ATGCGAGAAATATGCCGTTTGTGTCTGAAATCCACAGGAACCTTCTACCAAAACCTAAACATCTACAAAGAACTAATTCTCGCAATTATTCCAGAATATAATCTGAACTTAATCTTAACACCTCTGATCTGCGATGACTGTAGCAACACCCTTGAAAATGCTCACATGTTCAAGACTATGTGCTTAGATTCCGAAGATAGAATTACAAAATTGTTGCAAGGTAGAAACGGTGAAAATTATACATTGGACGATATATTAAATAAACCGGCTGTTGTGATAAAACAAGAAACCGTATGTGGATATATAGAAAATGATGTACTGCAAGATGAAGTTGATCCTTTAGCTGACGTTGAAAATATTCCGAAGATACCTGTGCAAATAAATAAGCCTACGAGTACagctataactaaaaaatttcaTTGCTCTGTGTGCAATATAGAGTTTCTCTTAGAGACTAACTTTCATATACATCTATGTGGGCATGCAGGAAAGGCCTTCAATTGCATTGTTTGTTATAAAGGGTTTAATAATGAGAAAGACTTTACGAAACATAGCACCGAGcactttaataataattcagACACGATAAGTACGGTGGAGCCAACAACATATTCACATACAATAAAAAGTACAAAAAGGACAAGAAATACagctataactaaaaaatttcaTTGCTCTGTGTGCAATATAGAGTTTCTCTTAGAGACTAACTTTCATATACATCTACGTGGGCATGCAGGAAAGGCGTTCAATTGCATTGTTTGTCATAAAGGGTTTAATAATGAAAAAGACTTTACGAAACATAGCACCGAGcactttaataataattcagACACGATAAGTATGGTGGAGCCAACAACATATTCACATACAATGAAAAGTACAAAAAGGACAAGAAATAACAGAAGAAGACCAAATACAAAGAGGAGACGTGTGCAAAATGGGATAGTTAAAACGCAAGTTAAAAATCTTGATATCGGTAAAGAAATTAGTAACAGGGAGGAcgtcaataaaaaaagtttgcgTCCTCGTTCAGTCGTTAAAAGCCCTATGCTAGAAAACACAGATGAAGATGAATATTTAGATCATGAAGGAAAGCAACACATTCTCAATTTCCTTCAAAGTCAGAGTGCATCAGAAAAAGAGCAAGCTGCGATTAAAACAAATCTTCCAGAGACCAATCAAAAACAGATCTTTAAATGTGCTCTTTGTTATGTCAAAAGGAATACTGAAAAAGAAATTACAGAACACATAAAACAGCATAAACCCGGATATAGAAAACAATGTGAAATCTGCGGAGATCTATTTGCAAATATGAAAGGACTTTCCGATCACTCCTACAGACAACATATGCCAACGCTATGTCTAGTAAAAGTATCCGATGAGTATACAACACcccagaaaacaaaaacacacaaAGAACTTAAAAATACCGGAAGAACAGCAAAACGGAAAGGAAGCAAACCTAGGGGAACACCAGCTAAGATGAAAAGACTGCAGAAAACAGATAATTTCGACGAATTGGTTGATATTTTGTGCGAAGAATTGGATGATCTTACCACAAACTCAAGCTTCAATTGCGAGTTTTGcgagaaaacctttaagatATACGAAGCTCTTCAAGAACATATGAAAGTACATTTTGAAGAACAGAACGTAGAGGAACCAGAGGAACAGGACCAAAATTCCTCATCCTCGTGTGATATCTGCGGTGCGTCCTTCCGTACTATTGGTCTACGGGACAAGCACATGTTCGCGCACACACTGTACATTGACCGAAAATTGATTTGTAATTTCTGCCAGAAAAGATTTGCTGACCCAGTTGTATATCAGTCACACGTAGTTCTACACAGTGATGACACCGATATATTTTGCAGCGATTGTCCATTACGTTTCCTAAGTCACACTCAGTATTCCTCGCATAAAAAATACCAACACAGTACATACTGCGATGGTTGCagaataacttttaatagcggAGATGCATTGTCACACCACGTTAGGCAatgcaaaagaaaatttttttgcaaGTATTGCGACTTTGAGGCTAAATCCAAGCAATCCCGTCAAGGCCATATCCTCATTCATGGGTTACCAACTGAAATAACGTCTTGTATGATTTGTGACTATAAATCGTTGAATACAGTCGAGCTGGTGAAACATATCAAGCAACACAACGAAATTGACGATGTAACGTGTCTACATTGCGATAAGAGTTTTATCTCGCAAAAAGAACTCAGAATCCATCAGATAAAACATAGCATTCTGGAAAACCCAggtcaaaaaataatttttaagtgtaaGCATTGCCATCAACAATTCAAAACCGAGCTTAAGATGAACGAGCACAAGAGAAACTGTGCGTTTAAACCCACTTGCGGCATATGCGGTAAGAAATGCGAGAACAATGGGAGATTACAAATGCATATGCGAGTGCATAACAAACCCCGAGTGCCGAGATTCAAATGCTATCTATGCGATCAAATCCACATTACAAAACTTCTATTGACGGAACACATGAAAAATCATGATGACGTCACGGATATACTATGCGACTACTGCCAATTGCGTTTCTACGAAGAATCCGCTTATTGCGAACATGTTCAAAAACTTCACACAACGTGCAGTAATTGTAACACTTTGTTTGGTGACTCTCGCACCTTGAGCGAACATATGCAATTATGCCCGAAATTAAACATGGTTGAATGTGCCCACTGCAAATATAAATCCATCACCTTCGTAGATCACAAACGACACATCACAAGCGAACATCCCTCCACGATAGAGCGAAAATATCATTGCGCTCTTTGCGATAGACGGTTTCGAACTAAACGTGATCTAACGTGGCATTTCGACCAACATGACATCGTCAAAGATATTCGTTGCGACTATTGCCATTTGAGATTTGTTTCTGCTGATCATCACTATCAGCACCTTGCTAATCATACATATAAGTGTCAGTTCTGTGGAGTTGTGGTAGAGTCTAAAGATGCTTTAGCAGAGCATATTGTTAAATGTAAGAAGAATCCTGATTATATTGAGGAGATTATTATATACGGCAAGGAGGGAAAGCTTACCTGTACTCATTGTAATGAAGTTTTTGGAAGCATGGTGCAGCTAAAAGATCATTTTAAGATGGTTGtattactttaa
Protein Sequence: MREICRLCLKSTGTFYQNLNIYKELILAIIPEYNLNLILTPLICDDCSNTLENAHMFKTMCLDSEDRITKLLQGRNGENYTLDDILNKPAVVIKQETVCGYIENDVLQDEVDPLADVENIPKIPVQINKPTSTAITKKFHCSVCNIEFLLETNFHIHLCGHAGKAFNCIVCYKGFNNEKDFTKHSTEHFNNNSDTISTVEPTTYSHTIKSTKRTRNTAITKKFHCSVCNIEFLLETNFHIHLRGHAGKAFNCIVCHKGFNNEKDFTKHSTEHFNNNSDTISMVEPTTYSHTMKSTKRTRNNRRRPNTKRRRVQNGIVKTQVKNLDIGKEISNREDVNKKSLRPRSVVKSPMLENTDEDEYLDHEGKQHILNFLQSQSASEKEQAAIKTNLPETNQKQIFKCALCYVKRNTEKEITEHIKQHKPGYRKQCEICGDLFANMKGLSDHSYRQHMPTLCLVKVSDEYTTPQKTKTHKELKNTGRTAKRKGSKPRGTPAKMKRLQKTDNFDELVDILCEELDDLTTNSSFNCEFCEKTFKIYEALQEHMKVHFEEQNVEEPEEQDQNSSSSCDICGASFRTIGLRDKHMFAHTLYIDRKLICNFCQKRFADPVVYQSHVVLHSDDTDIFCSDCPLRFLSHTQYSSHKKYQHSTYCDGCRITFNSGDALSHHVRQCKRKFFCKYCDFEAKSKQSRQGHILIHGLPTEITSCMICDYKSLNTVELVKHIKQHNEIDDVTCLHCDKSFISQKELRIHQIKHSILENPGQKIIFKCKHCHQQFKTELKMNEHKRNCAFKPTCGICGKKCENNGRLQMHMRVHNKPRVPRFKCYLCDQIHITKLLLTEHMKNHDDVTDILCDYCQLRFYEESAYCEHVQKLHTTCSNCNTLFGDSRTLSEHMQLCPKLNMVECAHCKYKSITFVDHKRHITSEHPSTIERKYHCALCDRRFRTKRDLTWHFDQHDIVKDIRCDYCHLRFVSADHHYQHLANHTYKCQFCGVVVESKDALAEHIVKCKKNPDYIEEIIIYGKEGKLTCTHCNEVFGSMVQLKDHFKMVVLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00981698;
90% Identity: -
80% Identity: -