Basic Information

Insect: Aphodius sticticus
Gene Symbol: RREB1
Assembly: GCA_963966075.1
Location: OZ014507.1:3337143-3346598[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0029 0.22 13.4 0.7 1 23 80 102 80 102 0.97

2 15 0.00058 0.045 15.6 0.7 1 23 115 137 115 137 0.97

3 15 9.1e-06 0.0007 21.3 2.8 1 23 143 165 143 165 0.98

4 15 8.5 6.6e+02 2.5 0.3 1 23 234 258 234 258 0.87

5 15 0.00025 0.019 16.8 2.5 2 23 264 286 264 286 0.97

6 15 0.48 37 6.5 0.5 1 20 334 353 334 355 0.91

7 15 0.15 12 8.0 0.1 1 23 478 500 478 500 0.96

8 15 1.6e-05 0.0012 20.6 0.3 1 23 509 531 509 531 0.99

9 15 0.0037 0.29 13.1 3.6 1 23 537 560 537 560 0.97

10 15 0.0017 0.13 14.1 2.1 1 23 893 916 893 916 0.95

11 15 0.00039 0.03 16.2 0.4 2 23 1118 1139 1117 1139 0.97

12 15 0.23 18 7.5 6.8 1 23 1145 1168 1145 1168 0.97

13 15 0.0088 0.67 11.9 2.4 1 23 1196 1220 1196 1220 0.94

14 15 0.035 2.7 10.0 0.4 3 23 1331 1351 1329 1351 0.93

15 15 3.7 2.8e+02 3.7 8.3 1 23 1357 1379 1357 1379 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0029	0.22	13.4	0.7	1	23	80	102	80	102	0.97
2	15	0.00058	0.045	15.6	0.7	1	23	115	137	115	137	0.97
3	15	9.1e-06	0.0007	21.3	2.8	1	23	143	165	143	165	0.98
4	15	8.5	6.6e+02	2.5	0.3	1	23	234	258	234	258	0.87
5	15	0.00025	0.019	16.8	2.5	2	23	264	286	264	286	0.97
6	15	0.48	37	6.5	0.5	1	20	334	353	334	355	0.91
7	15	0.15	12	8.0	0.1	1	23	478	500	478	500	0.96
8	15	1.6e-05	0.0012	20.6	0.3	1	23	509	531	509	531	0.99
9	15	0.0037	0.29	13.1	3.6	1	23	537	560	537	560	0.97
10	15	0.0017	0.13	14.1	2.1	1	23	893	916	893	916	0.95
11	15	0.00039	0.03	16.2	0.4	2	23	1118	1139	1117	1139	0.97
12	15	0.23	18	7.5	6.8	1	23	1145	1168	1145	1168	0.97
13	15	0.0088	0.67	11.9	2.4	1	23	1196	1220	1196	1220	0.94
14	15	0.035	2.7	10.0	0.4	3	23	1331	1351	1329	1351	0.93
15	15	3.7	2.8e+02	3.7	8.3	1	23	1357	1379	1357	1379	0.98

Sequence Information

Coding Sequence: ATGCAAGGAAACATCTGTATGCCACTCGACATCGAAGCAGGATCATCGCCACCACACCAGAAGATTTCAGATGCCACTGGAACAATGGATCTGACCACAAACGAATCAAAAACCAAAGAAAACCAAAGCATTCGAACCGATTCCGGGTTCCTATCAGCCTCAAACAACACCAACTACACAGCTGACCACCAAAGCGACTCCGACAACAGGAGCGACTGCAGTTCACCCGAAAAGAAACACCCTTGCCCAATCTGCGATAGCATGCTTACTGGACAGCATGAATTAACCCTTCACATCCGTAGTCATAACAACGACAATGAAACGCAGCAATCAGACAAAGGGTTCATATGCAAGATTTGCGAGAAGGTCCTCTGCTCGAGTTCGAGTCTGGACAGGCATGTCTTGGTCCATAGTGGGGAACGCCCTTTTTCCTGTTCAGTCTGCGGGGTTACCTTCACCACCAATGGGAATATGCATCGACACATGAAGAAGCATCCGCATTTGAAGAATGGGTACGAGTCTGACAGCTGTGGCAGCTCAGACAGCAGTGGGAGCAGCTCGAGGAAGGTCGAATACAACAACAACCAGATTGACGGGGTTAACGCGACAAGCAAGCATGCTGGGGTAAAGCGTAAGCTGGAAGACGACCTTACCCATGAGGAATTTAAGAATGGTAGGATCAAACTGGAGATTGAGCATTACAAATGCCAGTTGTGCGAAAGAGAGGACTTCTCAAGCGTTGAGAGCTACAAGCTACATCTCGCAGAGAACCACCCTGAGCACCCTGCGGAGTGCTCACAGTGCAAGCAAAGCTTCTCGAACCATAAGGCTTTGAACCTCCATATGAACACCGTGCACGCCGACCAGAACGGAAAGCTAAAGACCTTCATCCATGGGTTTAAGGATTGCACATCGGTTGACTTCTCCTGTGAGAAGTTTCCGCATATCGCCAAGAGTAAATGCGAGGAGTTCATCCACAAACCAGCGTCTGAAATCAAATTCCAATGCCGGGAGTGCCCCAGGGCTTTTCCTTGCTCGACTTCCCTGGAGATGCACGAGAAAGATTGCATGCCTGGTGTTAACCATACAATCCCGCAGAAGTACGACACCAGCTTCTTAAAACGGAAGGAATTCTTCAACATACTCGACCTAAAGGATAACTCAATGGATAGGTCCAATCATCATCAACCAATCATCTCAAAAGCCATCCTCCAGAACGCTTTAAGACCCAGTTTTGACCACACCTCCAAAGATCTAGCTGATATCCCGACTATCCTCTCTTCGATGGCTGCCAACGGTGGGTTCATGCAACACCTATCCAAGAACGAACCCACCCATCACGAGGCACAAAACCTAGAAAACAAAACCGACGAAGAGGAAGCCCAGGACATCTTCGCTATTGAGTTCAGGAAGATGAAGCTCCGCGGGGAGTTCCCCTGCCGACTCTGCACCGCTGTTTTTCCTAACCTAAGAGCTTTAAAAGGACATAACAGAGCTCACCTGAACGGGAGCAACAACGGTACTTACCAATGCAACATGTGTCCATACGCTTCGCAAGATAAATCAGCCTTGGTGCGTCATATGAGGACACACAACGGAGATCGGCCTTACGAGTGCTCCTTGTGCAAGTATGCCTTCACCACAAAAGCGAACTGCGAGAGGCACTTGCGCAATAGGCACAACAAGAACACCAGAGACGAAGTGAAGAACTCGATCATCTACCATCCTTCGGAAGACCCTACGAATGATGACCTAAACAAACTGGCTAGAGATGACACCAAAAAGATGAATAATAGTTTTACGTCGAATGCTGATAGTGATGTCACGCAAGATACCATGAGGAGTACGACGCCAAAGAGCTGCCTAAGCGAGCACTTCGTTAGGAGGAGTGAACCGTTGCTTCAGTTACCTAATCCGTTGCCTTGGGTTGGACAACCGACTGCGCCATATCGCAGCATCAACGAGATTATCACCGGGGAGAATCTTAAGACCCTTAGTGAGATTCCTTCGTTACAAAGCAGGTTCGCCTTCAACCCTACTATTACGAATACGTCCACCCCGCAGAAGCCAAAGATCCACGTGAAGACTTTAGATACCCTCAAGCAGATACCTGAGTATGACAGCGACCCTGACTATGATAAACCTATCGATTTGAGTAAGAAGAAGGCGGAGTATTCGGATGAACGGTCGGATTCTGAAGAGGAGGAACAAGAGTTAGCGGAAGATTTGACCAGGAAAGTTCAAGAGGCTCCGCAATTCAATAACATCCTAGCGGCGCAACAGATCATCAAAAACCACCAGCTAGCGATGCTCCAGAGCTTCCCCCATTGGCCACACCCGTTCCCCCCGCAGTTCCTCTTTCCCCTCCTGCAAGACCCTGAGAGATTCAACCGTCCAACTCCTAACCCAATGATAAACGAAAACCGGGGCTTCCCAGGCTTACCACAACCGATGTTTCCAACATTCCCCTCGCCTAAATCAGAAGACATAAAACCGTTATCGGTCAACATCGACCCGACATTCGCGGAGAACATTTCAAAGATGCAAAGCCCCATCCAGCCACAACCATCAAAACAAGAATCAGTTTTGCATTCACCTAATTCGGTCAAAATGGTGATCAAAAACGGCGTTTTAATGCCAAAACAGAAGCAGAGGCGTTACAGGACGGAGAGGCCGTTTGCTTGCGAGCACTGCTCTGCTAGATTCACCCTCAGGTCTAACATGGAGCGCCACATCAAACAGCAACATCCCCAGTACTATTCCCAGAGGCAACGCTCTAATTCAAACGCTGGTAGGAAGGCTGTTAATGGTGTTTCTGCTAATCTGACAGTACCAACGTACGAACCCCAGAGGAGCCCTGAGGATGATACCAAAAACCAGATTTCCGATGAGTTGAAGTACGCTATTTTGGCGCAGCATCTCCGAGCGAACCAAGACTTCAAACAATCGATTACTCAAGTGAAAAAAGAAGAAGATGATGAGTGTGCGTTGGTCATTGACGAGCATGAGGAGAAGATGGATACTGATGAGTTTGAGAGGAGACGAATGCTGGAGGATAAGTTGAAGGAACTCAAGGAGAAGAAAGCCAGGAGTGAGGAGGTCCAGGATCTTGTTCCTGTTTCGAGGCTGCTGGATAATGCGTCACAGCAACCTTTTAAAGAGTTCTTCAAGACCGAGAGGGACGACCATGACCAAGATGAAGATGAAGAGGAAGATGAGGAAGGCTTGGTGGCCAGTGGGAGTACCAGTGAGGCCAACTCTGGTTCTGATGACAAATCAGAATCAGAGAACCCAAGCAGCACACGCCCAGTCAAAAAGAAGTCAGCATACTCCTTAGCACCAAACCGGGTCAGCTGTCCGTACTGCAACCGGAAGTTCCCTTGGACCTCCTCTTTGCGACGTCACATCTTGACCCACACCGGCCAGAAACCCTTCAAATGCAGCCATTGCCCATTACTCTTCACCACGAAGTCCAACTGCGACCGCCATCTTCAGCGGAAGCACGACAGCGCAGCCTCAACAATCCCAAACGACTCCGGCAACAACAACGCCAGCTTCCTCATGCGGAACGTCCCAGAAAGACCTTACAAATGCTCGACGTGCCCCAGCAGCACATTTTCAACAGCTTCCAACCTGAAGAAACACATCCACGGGAAGCATAACGATGGCAAGATGCAAGGCTACGACGCTGGAAGTTCCGAAGATGAGAAACACGAGTGGGAGGGTCAACCAAGCCAGAAATTAGGTCAGGAGCCACTGAATTCTTCAGATCTACCGTTCAAGTGCCATCTTTGCGAGGGTTCCTTCGGTGAGCGGAACGATTGCTTGGACCATATTAAGGATAAACATCCTTCGGAGTATGAGTTGCTCATGTCGAAAAACGCTTTGGACAGTAACGCTTCCCCACCTGAGGATTCCTCTAACAACCACGATGAAGAAGACATCGAAATCCGCGGTAAATTTCCTGATTATTCCAATAGGAAGGTGATCTGCGCTTTCTGCATGAGACGGTTTTGGTCTGCTGAAGACCTGAGAAGGCATATGCGTACCCATACTGGGGAACGCCCGTTTAGCTGCGACATCTGCTGTAGGAAATTCACGCTGAAGCATAGTATGCTTCGTCACAGGAAGAAGCACAATTTTATGGAGGGGGGTGATAACGCGAATAGCGATGAAGATATCGTCAATCCCTTGGAGAAGTGTAAAGTTTCGGAGAAAACTGATGAGTCTGATGGCATTGAAAGTGGAGACCTGATCGGTAATTTGCTGGGAATTCAAGGGTCGATTGTCGACCAGATCATAACCTCAACGCCTGATGACGCCGCTAAGCTTTTGGGGGTTAGGAACGGTAACCCTGAGTAA
Protein Sequence: MQGNICMPLDIEAGSSPPHQKISDATGTMDLTTNESKTKENQSIRTDSGFLSASNNTNYTADHQSDSDNRSDCSSPEKKHPCPICDSMLTGQHELTLHIRSHNNDNETQQSDKGFICKICEKVLCSSSSLDRHVLVHSGERPFSCSVCGVTFTTNGNMHRHMKKHPHLKNGYESDSCGSSDSSGSSSRKVEYNNNQIDGVNATSKHAGVKRKLEDDLTHEEFKNGRIKLEIEHYKCQLCEREDFSSVESYKLHLAENHPEHPAECSQCKQSFSNHKALNLHMNTVHADQNGKLKTFIHGFKDCTSVDFSCEKFPHIAKSKCEEFIHKPASEIKFQCRECPRAFPCSTSLEMHEKDCMPGVNHTIPQKYDTSFLKRKEFFNILDLKDNSMDRSNHHQPIISKAILQNALRPSFDHTSKDLADIPTILSSMAANGGFMQHLSKNEPTHHEAQNLENKTDEEEAQDIFAIEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGSNNGTYQCNMCPYASQDKSALVRHMRTHNGDRPYECSLCKYAFTTKANCERHLRNRHNKNTRDEVKNSIIYHPSEDPTNDDLNKLARDDTKKMNNSFTSNADSDVTQDTMRSTTPKSCLSEHFVRRSEPLLQLPNPLPWVGQPTAPYRSINEIITGENLKTLSEIPSLQSRFAFNPTITNTSTPQKPKIHVKTLDTLKQIPEYDSDPDYDKPIDLSKKKAEYSDERSDSEEEEQELAEDLTRKVQEAPQFNNILAAQQIIKNHQLAMLQSFPHWPHPFPPQFLFPLLQDPERFNRPTPNPMINENRGFPGLPQPMFPTFPSPKSEDIKPLSVNIDPTFAENISKMQSPIQPQPSKQESVLHSPNSVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQYYSQRQRSNSNAGRKAVNGVSANLTVPTYEPQRSPEDDTKNQISDELKYAILAQHLRANQDFKQSITQVKKEEDDECALVIDEHEEKMDTDEFERRRMLEDKLKELKEKKARSEEVQDLVPVSRLLDNASQQPFKEFFKTERDDHDQDEDEEEDEEGLVASGSTSEANSGSDDKSESENPSSTRPVKKKSAYSLAPNRVSCPYCNRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLQRKHDSAASTIPNDSGNNNASFLMRNVPERPYKCSTCPSSTFSTASNLKKHIHGKHNDGKMQGYDAGSSEDEKHEWEGQPSQKLGQEPLNSSDLPFKCHLCEGSFGERNDCLDHIKDKHPSEYELLMSKNALDSNASPPEDSSNNHDEEDIEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRKFTLKHSMLRHRKKHNFMEGGDNANSDEDIVNPLEKCKVSEKTDESDGIESGDLIGNLLGIQGSIVDQIITSTPDDAAKLLGVRNGNPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00981556;
90% Identity: iTF_00981556;
80% Identity: -