Basic Information

Insect: Aphodius sticticus
Gene Symbol: -
Assembly: GCA_963966075.1
Location: OZ014512.1:46303502-46307084[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.1e-07 8.6e-06 27.3 1.3 1 23 263 285 263 285 0.99

2 12 5.7e-06 0.00043 22.0 7.2 1 23 291 313 291 313 0.98

3 12 8.3e-06 0.00064 21.4 0.8 1 23 319 341 319 341 0.99

4 12 0.11 8.1 8.5 3.4 1 23 347 369 347 369 0.94

5 12 0.0012 0.088 14.7 0.8 3 23 377 397 375 397 0.98

6 12 3.6e-08 2.8e-06 28.9 2.6 1 23 403 425 403 425 0.98

7 12 3.4e-06 0.00026 22.7 1.4 2 23 431 452 430 452 0.97

8 12 1.3e-05 0.001 20.8 1.9 1 23 458 480 458 480 0.99

9 12 1.7e-05 0.0013 20.4 3.6 1 23 485 507 485 507 0.98

10 12 3.9e-06 0.0003 22.5 4.1 2 23 514 535 513 535 0.98

11 12 4.6e-07 3.5e-05 25.4 1.9 1 23 541 563 541 563 0.98

12 12 0.00011 0.0083 17.9 5.4 1 23 569 591 569 591 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.1e-07	8.6e-06	27.3	1.3	1	23	263	285	263	285	0.99
2	12	5.7e-06	0.00043	22.0	7.2	1	23	291	313	291	313	0.98
3	12	8.3e-06	0.00064	21.4	0.8	1	23	319	341	319	341	0.99
4	12	0.11	8.1	8.5	3.4	1	23	347	369	347	369	0.94
5	12	0.0012	0.088	14.7	0.8	3	23	377	397	375	397	0.98
6	12	3.6e-08	2.8e-06	28.9	2.6	1	23	403	425	403	425	0.98
7	12	3.4e-06	0.00026	22.7	1.4	2	23	431	452	430	452	0.97
8	12	1.3e-05	0.001	20.8	1.9	1	23	458	480	458	480	0.99
9	12	1.7e-05	0.0013	20.4	3.6	1	23	485	507	485	507	0.98
10	12	3.9e-06	0.0003	22.5	4.1	2	23	514	535	513	535	0.98
11	12	4.6e-07	3.5e-05	25.4	1.9	1	23	541	563	541	563	0.98
12	12	0.00011	0.0083	17.9	5.4	1	23	569	591	569	591	0.97

Sequence Information

Coding Sequence: ATGTCAAATCAAGTCGTTTTTCATGAGCGCACAAGTCCAAATGGGCTTGCAATGGAGAATATCTTTCACGTGGCCGATTGCTGTCGCGCCTGTTTACGAATTGAATGTTCCCTGACCCCCATAAACTCACCTGACAGCGATTCGATAAAATTCTGCGACAAACTAGAAGCTTGCGTCTCAGAAATTATGTGGTTAAAAGAAGGTTTACCATCCGTAATATGTTCGACATGTATCGACAGACTACGAGTGGCTTACGATCTACGAAACGTTTGTTTACAGTCCAATCAAACATTAATGCGTCTAACGCAAATGCAAGATGAAGGGAAAACGGAACATTTTATAGTTACTAGTAGGCCTTTGAATACACCTACGAAGTTTGAATTTAGTATTCCGCAAACTACGCCGGAGTTGCCTGGTATTATTGAGGCCCAAAATCCTGAggaatatttgcatttgaagcattttttggaTAACGATGAGGAATTAACGAAGAATGAGGTACTGGGGGATGTTGGTACCCCGCGTAGTGTCACTCCGGAAGCACACAAAACCGAGCATTTTAGTGCGGAGGCACGGGTGCATCCTGTTATAACGCAAGTACAACATCAGCAGATACAAACGAGTGATTTGCAAGAAACTACGCAGTCATATCAACCACCGGAACAACTGCATCCAACCATAATCCAAGTCCAAGCGCCCCGCCAGGTTATCAAACGCACGACCGGCATCCAAGTACGCCCCCTGACACCGACGTCCGCCGACGTAGCCGCCACGGAACTCAAACCGTTCACCTGTACCGTCTGCGGGAAAAACTACCGAAAAAACGCGAATCTCCGCATCCACATGCGCACGCACACCGGCGAGAAACCGTTCGAGTGCAAATACTGCGAGAAACGGTTCTATCATTCCTCGCACTTACGAGAACACATCCGCCGCCATACCGGCGAGAAACCCTTCCAATGCGCCGTCTGCAATAAACGATTTACGATAAAAGGCGAACTAACGATGCACATGAAATCACACACAGGCGAGAAGCCGTTTGCGTGTACGTGCTGCGATCGAAGATGTCTAACCGCAGCCGATTTGAAGGTACACATGCGTACGCACACTGGGGAGCGACCTTTCGGTTGTACGACGTGTGGGAAAAAATTTGCGTCCACGTATATCTTGAATTCGCATATAAAAACGCACACGGGGGAGCGCCCGTATTCCTGCGCCGTTTGCGATAAAACCTTCACGCAATCGTCGCATTTAAACGTACACATGCGGAAACACACGGGTGAAAAAGTTTCCTGTAAAGTTTGCGATGCCAAATTTACCCATTCCTCCCAATTAACGGTGCATATGCGGGAACACACCGGGAAACAACCGTACCGTTGTAATATCTGCGAGAAGGTCTGTAATTACGCGTCGGAACTTCAAACGCACCTGATGAAACATACCGGAGAAAAATTTTCGTGTTCCACTTGCGATAAAAAGTTTACGACGGCTGCATATCTTCACGAGCATACGCGGACTCATACGGGCGAAAATCTGTCGACTTGTACGATTTGCGATAGGCAGTTTACGCGGCACCAGTATCTGGAGAAGCATATGCGTACCCATACTGGGGAAAAGCCGTTTCAGTGTTACTCGTGCGGGAAGAAGTTTACGCAGAGTTCGTCGTTGAAGGTGCATCTGCGTATTCATACGGGAGAGCGGCCGTATTGCTGTACGATCTGCAATCGGAGGTTTACGACATCTTCGGATCTGTCCCAGCATAATAAGaagcataataataaaaagatgtACGTCGATTTGTAA
Protein Sequence: MSNQVVFHERTSPNGLAMENIFHVADCCRACLRIECSLTPINSPDSDSIKFCDKLEACVSEIMWLKEGLPSVICSTCIDRLRVAYDLRNVCLQSNQTLMRLTQMQDEGKTEHFIVTSRPLNTPTKFEFSIPQTTPELPGIIEAQNPEEYLHLKHFLDNDEELTKNEVLGDVGTPRSVTPEAHKTEHFSAEARVHPVITQVQHQQIQTSDLQETTQSYQPPEQLHPTIIQVQAPRQVIKRTTGIQVRPLTPTSADVAATELKPFTCTVCGKNYRKNANLRIHMRTHTGEKPFECKYCEKRFYHSSHLREHIRRHTGEKPFQCAVCNKRFTIKGELTMHMKSHTGEKPFACTCCDRRCLTAADLKVHMRTHTGERPFGCTTCGKKFASTYILNSHIKTHTGERPYSCAVCDKTFTQSSHLNVHMRKHTGEKVSCKVCDAKFTHSSQLTVHMREHTGKQPYRCNICEKVCNYASELQTHLMKHTGEKFSCSTCDKKFTTAAYLHEHTRTHTGENLSTCTICDRQFTRHQYLEKHMRTHTGEKPFQCYSCGKKFTQSSSLKVHLRIHTGERPYCCTICNRRFTTSSDLSQHNKKHNNKKMYVDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00137213;
90% Identity: iTF_00137213; iTF_00981437;
80% Identity: -