Asti042994.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius sticticus
Gene Symbol
-
Assembly
GCA_963966075.1
Location
OZ014514.1:34981982-34986172[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.00012 0.0092 17.8 0.4 1 23 59 81 59 81 0.99
2 24 0.48 37 6.5 1.4 1 23 87 110 87 110 0.96
3 24 0.0027 0.2 13.6 5.5 1 23 116 138 116 138 0.98
4 24 0.0013 0.1 14.5 0.4 1 23 252 274 252 274 0.98
5 24 0.48 37 6.5 1.4 1 23 280 303 280 303 0.96
6 24 0.0032 0.25 13.3 5.7 1 23 309 331 309 331 0.98
7 24 0.079 6.1 8.9 2.3 1 23 366 388 366 391 0.77
8 24 0.00012 0.0094 17.8 0.4 2 23 395 416 394 416 0.97
9 24 0.00015 0.012 17.5 2.1 1 23 422 444 422 444 0.99
10 24 0.0075 0.58 12.1 0.4 1 23 448 470 448 470 0.97
11 24 0.00011 0.0088 17.9 2.1 1 23 476 498 476 498 0.99
12 24 0.27 21 7.3 0.9 1 20 504 524 504 526 0.95
13 24 0.00088 0.067 15.1 1.8 1 23 530 552 530 552 0.99
14 24 0.0012 0.093 14.6 2.0 2 23 559 580 558 580 0.97
15 24 0.012 0.93 11.5 0.2 1 23 586 608 586 608 0.99
16 24 0.0017 0.13 14.1 1.9 1 23 614 636 614 636 0.98
17 24 0.002 0.15 14.0 0.2 3 23 644 664 643 664 0.98
18 24 0.0088 0.68 11.9 2.0 1 23 670 692 670 692 0.99
19 24 0.01 0.77 11.7 5.7 1 23 993 1015 993 1015 0.99
20 24 6.8e-05 0.0052 18.6 1.4 1 23 1021 1043 1021 1043 0.99
21 24 5.6e-06 0.00043 22.0 0.5 1 23 1049 1071 1049 1071 0.99
22 24 4.7 3.6e+02 3.3 2.7 1 23 1077 1099 1077 1099 0.86
23 24 3.1e-05 0.0024 19.6 1.1 1 23 1105 1127 1105 1127 0.96
24 24 0.00013 0.0097 17.7 0.7 1 23 1133 1155 1133 1155 0.99

Sequence Information

Coding Sequence
ATGGGACCACCAGAGGATGTATTGGAAATCATCGACGTTGACGACACATTTGCACAAGATGATGGGCGGGAGAAATTAGGAATGAAAccttacaaatgtaacatatcTAGCCCTGCTTGTGCAACAAGTGCTAGTATtactgagcacttgagaacgcatacaggaaaGAAGCAATTTCAGTGTAGCGAGTGTGATCATGTTAGTGCAAATCGTGGTGCTCTTACAATACATATTAGAAAACATACAGGAGAGCGACCGTTCAAATGCTCCGTTTGTGAATATGCTTCTGCATACGTTGGATGTCTTCGACAACATCTGACACGACAACATCAGATAAAGAAGACACATAAATGCGTGGattgtgactatgcttgtgctaAATCCTCCACCCTTAGAAAACATAAGAAAACGCATACAAGAGCGAAATTAGTTAAACGCACTGCTTGTGACTTTGGCACCGTAACCTCGGAGCATCTTGAAATTTCGAACAAAATGCAGAAAATGGAATATGACGAAAGTACTGATCCTgcaaactgcgatagttcactACCCGAACAACGCTCTGAAGACCCTGTGGGAATAGAACCAGTTGCGGATCTATTGGAAATCATCGACCATGAAGACACAACTGCACAAGATGATGAGCAGAAGAAATTAGGAGTGGAAccttacaaatgtaacatatcTAGCCCTGCTTGTGCAACAAGAGCTAGTATTACTGCGCACTTGAGAACGCCTACAGGAATGAAGCTATTCCATTGTGGCGAGTGTGATTATGTTAGTGCAAAACGTGGTGCTCTTACAATACATATTAGAAAACATACAGGAGAGCGACCGTTCAAATGCTCCGTATGTGAATATGCTTCTGCATACGTTGGATGTCTTCGACAACATCTGACTCGACAACATCAGATAAAGAAGACACATAAATGCGTGGattgtgactatgcttgtgttAAATCCTCCACTCTTAGAAAACATAAGAAAACGCATACAAGAGCGAAATTAGCTAAACGCACTGTTTGTGACATTGCAACCGTGACCTCGCAGCATCTTCAAATTCCCAACAAAGCGCACATCAAACCGAAACCAATCCACATATGCCCAGTTTGCGAATATACTTGTActaaaaaatttattcttaagaaCCATATGATTAATCACATTAGAGTGAAAGTATCTCAATGCGGCCAGTGTGATTATTCTTCTTCAAACCGTGCTGATTTTATAAGGCATATGAGAATTCATTCACCTGTAAAACCATTTCAGTGTCTAGTTTGTGAGTATGCTTGTACTAACCGCTCTAGTCTTCAACTACATATCAAAACGCATATAGACGAGTTTAAATGCGACCTGTGTGAATATTCAACCACAACGCTGGAGCAACTTGTAGTTCACAAGGGAACTCATTACGAACAGGAACCATTTACATGCCAAGATTGTGACTATACTTGTACAGAGGCCTCGACTCTTGAAGAGCATACTAGAACGCATACAGAGAGGAACATATTTAAATGCAGTTATTGTAACTTGTATTCAACTTCAACCTTGAAGCACCTGGAAATACACATCGTAAAGTGTGTACCATATAGATGCAAGCTCTGTCCGTACGGTGCTACACGTTGTAGAGATCTTAAAGAACATATGAGAGTGCATACGGGAATAGAGCCGTTGAAATGTACATTTTGCAACTATACTACTAACTATCGTACTAATCTAGACCGGCATATTAGAGTGCATACCGGAGAAAAGCCGTTTAAATGTGATTTCTGCGACTATGCTCGTGGAGATAAAGCTGGTCTTCTAATGCATATGCTAACGCATAAAGGGGCGAAACCCTATAAATGTAAActatgtgattatgctggtgTATCCAGTCATAGCTTAAGACGGCATAAGGCAACGCATAAAGGAAAGAAGAATTTGTTATGCAACATATGTAACTATGCTACTGCACAGCGTGTTCAACTAGCCAGACATATGACATCACATACAGGACTGAGGCCATTTCAATGTTCCTTCTGCAGCTATGCAGGTGCTGTGAAATGTGACCTTACACGTCATATGCAAACACATCCAAAAGAAACAAGTTCTAAACAAACCATATTAagtaaactcataacgaacaTAGCTGGAGAAAGCAGACCAAGTGCAAGCTTCGTAACATCTGCGGAAGACCTTCAACTAACAACTCCGGTGGGGGAAGATTGCACTCCAGTGCAGAAtacattgaagaaatgcaaatttaTAGTGACGTCAATCATGAACAACCAAGATGATATGGATAATATAATTGAAGACCATCCTGCGAACCAGGTTGAGGAAGAAGTAAGTATGGATGAAATTAGACAAACGATGAACCAGAGTGATGGAGTGAGAGATGAATTTCCGAAAGACAAAGAAGTGGCAGAGAAGGGTACGGAAGTATCTCAAATCAGGAACGTTACTGAAGATTATATTTGTGACATACATGATACAAATGTAGTAGATAGTAGGTGCGATGTGATGGTAGATATAACCAAGGTGAAGGCAGAAGTAACTACAGATGAAATAACACCAACGATGAACCATAGTGATGGAGTGAGAGATGAATTACTGAAAGACAAAGAAGTGGCAGAGAAGGGTACGGAAGTATCTCAAATCAGGAACGTTACTGAAGATTATATTCGTGACATACATGATACAAATGTAGTAGATAGTAGGTGCGATGTGAAGGTAGATATAACCAAGGTGAAGGCAGAAGTAACTACAGATGAAATAACACCAACGATGAACCAGAGTGATGGAGTGAGATATGAATTACCGAAAAACTCAGAAATGGCAGAGAAGTGTAATCTTCAACAGCGTACGAAAACGCATGGGGAAGAGACGTTATTTAACTCTCATAGCGAACAGACACCATTTACATGCCAAGATTCTGGCACGATTCCGGCCTCGATGCAGCTTCAAATGCACACCACAACGCATGtccaatattttaaatgcaaattctGTGCGTATGCCAGTACACGTAGTGGTTGTCTTAAACACCATATGAGAGTGCATTCGGTAGAAAAACCGTTTAAATGTACAATTTGCGACTACGCTTCCCAATATCGTAGCAGTCTAACACAGCATATCAGAACGCATTCCGGTGAGAAACCTTTTAAATGTGATGTGTGTGACTATTCTGGTACACAAAAATCTAATCTAGAAATGCATATGCTAACGCATGCAGTGGAGAAGCTCTATAAATGTAAACTATGCGATTATGTTAGTTCATTCCGCAATACCCTTGTATGCCATGAGGTAACGCATACAGTAGCGCAGCAATTTTTATGCAACATATGTAACTATGCTACTGCACAGCGTAGTAAACTAACCAGACATATGAGAAGCCATACAGGACAGAAACCATATCAATGTTCCTTATGCAGCTATGCGGGTGCTGAGAAATCTTACCTTACACGTCATATGAGAACACATTCAAAAGAAAAACCATCTAAACAAACCATATTAAGCAAACTCATAACAAACATGGCTGGAGAAAGCAGCCCAAGTGCAAGCTTCGTAACATCTGCGGAAGACCTTCAACTAACAACTGCGGTGGAGGAAGATTGCACTCCAGTGCAGAAtacattgaagaaatgcaaattcaTAGTGACGTCAATCACGAATAAGCAAGATGATATGTATATAATTGTAGACCATCCTGCGAACCAGGTCGAGGGAGAAGGAAGTATGGATGAAACGAGACAAACGATGAACCAGAGTGATAGAGTGAGAGATGAATTACCGAAAAGCAAAGCAGTGGCAGAGAAGTGTAAGGAACTGTCTCCTCCAATCAGGAATGTAACTGAAGCTGATATTCGTGACATACATGCTATAAATGTAGTAGATAATAGGTGCGATGTGATGGTAGATATAACCAAGGTGAAGGCAGAACTAACTACAGATGAAATAGCACCAACGATGAACCAGAGCGATGGACTGATGTATGAAATCATAAAGGTTAACGAAGAGATACAGAAGTGGGAGCAAGAATTGATACTTGAGGTATGGCAAAAAATGGAAGCGCTTGCTGCAGTGGATGCTCTACAGAAGGAATTGGAGGAACGGGAGAAACTGTGGATGGAGGAGAAAGGGAAGCTTGAGGATCGCATACATGAAttagaaaatgaaaaaacaGATATAaggacattattattttaa
Protein Sequence
MGPPEDVLEIIDVDDTFAQDDGREKLGMKPYKCNISSPACATSASITEHLRTHTGKKQFQCSECDHVSANRGALTIHIRKHTGERPFKCSVCEYASAYVGCLRQHLTRQHQIKKTHKCVDCDYACAKSSTLRKHKKTHTRAKLVKRTACDFGTVTSEHLEISNKMQKMEYDESTDPANCDSSLPEQRSEDPVGIEPVADLLEIIDHEDTTAQDDEQKKLGVEPYKCNISSPACATRASITAHLRTPTGMKLFHCGECDYVSAKRGALTIHIRKHTGERPFKCSVCEYASAYVGCLRQHLTRQHQIKKTHKCVDCDYACVKSSTLRKHKKTHTRAKLAKRTVCDIATVTSQHLQIPNKAHIKPKPIHICPVCEYTCTKKFILKNHMINHIRVKVSQCGQCDYSSSNRADFIRHMRIHSPVKPFQCLVCEYACTNRSSLQLHIKTHIDEFKCDLCEYSTTTLEQLVVHKGTHYEQEPFTCQDCDYTCTEASTLEEHTRTHTERNIFKCSYCNLYSTSTLKHLEIHIVKCVPYRCKLCPYGATRCRDLKEHMRVHTGIEPLKCTFCNYTTNYRTNLDRHIRVHTGEKPFKCDFCDYARGDKAGLLMHMLTHKGAKPYKCKLCDYAGVSSHSLRRHKATHKGKKNLLCNICNYATAQRVQLARHMTSHTGLRPFQCSFCSYAGAVKCDLTRHMQTHPKETSSKQTILSKLITNIAGESRPSASFVTSAEDLQLTTPVGEDCTPVQNTLKKCKFIVTSIMNNQDDMDNIIEDHPANQVEEEVSMDEIRQTMNQSDGVRDEFPKDKEVAEKGTEVSQIRNVTEDYICDIHDTNVVDSRCDVMVDITKVKAEVTTDEITPTMNHSDGVRDELLKDKEVAEKGTEVSQIRNVTEDYIRDIHDTNVVDSRCDVKVDITKVKAEVTTDEITPTMNQSDGVRYELPKNSEMAEKCNLQQRTKTHGEETLFNSHSEQTPFTCQDSGTIPASMQLQMHTTTHVQYFKCKFCAYASTRSGCLKHHMRVHSVEKPFKCTICDYASQYRSSLTQHIRTHSGEKPFKCDVCDYSGTQKSNLEMHMLTHAVEKLYKCKLCDYVSSFRNTLVCHEVTHTVAQQFLCNICNYATAQRSKLTRHMRSHTGQKPYQCSLCSYAGAEKSYLTRHMRTHSKEKPSKQTILSKLITNMAGESSPSASFVTSAEDLQLTTAVEEDCTPVQNTLKKCKFIVTSITNKQDDMYIIVDHPANQVEGEGSMDETRQTMNQSDRVRDELPKSKAVAEKCKELSPPIRNVTEADIRDIHAINVVDNRCDVMVDITKVKAELTTDEIAPTMNQSDGLMYEIIKVNEEIQKWEQELILEVWQKMEALAAVDALQKELEEREKLWMEEKGKLEDRIHELENEKTDIRTLLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00138309;
90% Identity
iTF_00138309;
80% Identity
iTF_00138309;