Basic Information

Insect: Aphodius sticticus
Gene Symbol: su(Hw)
Assembly: GCA_963966075.1
Location: OZ014507.1:415492-422570[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.3e-06 0.00026 22.7 0.5 1 23 131 154 131 154 0.96

2 13 6.3e-05 0.0048 18.7 0.3 2 23 186 208 185 208 0.94

3 13 0.0011 0.083 14.8 0.1 1 23 214 236 214 236 0.96

4 13 0.00013 0.0096 17.7 2.2 1 20 242 261 242 263 0.95

5 13 3e-06 0.00023 22.8 0.6 1 23 274 296 274 296 0.98

6 13 0.00016 0.013 17.4 0.2 1 23 306 328 306 328 0.98

7 13 1.1e-05 0.00082 21.1 0.4 1 23 334 356 334 356 0.98

8 13 3.7e-06 0.00029 22.5 0.8 1 23 362 384 362 384 0.99

9 13 6.5e-05 0.005 18.6 4.6 1 23 390 412 390 412 0.95

10 13 0.00012 0.0089 17.8 2.0 1 23 418 441 418 441 0.95

11 13 5.9e-05 0.0045 18.8 5.7 2 23 448 469 447 469 0.96

12 13 3.1e-06 0.00024 22.8 0.5 1 23 475 497 475 497 0.98

13 13 1.5e-05 0.0011 20.7 3.1 2 23 504 526 503 526 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.3e-06	0.00026	22.7	0.5	1	23	131	154	131	154	0.96
2	13	6.3e-05	0.0048	18.7	0.3	2	23	186	208	185	208	0.94
3	13	0.0011	0.083	14.8	0.1	1	23	214	236	214	236	0.96
4	13	0.00013	0.0096	17.7	2.2	1	20	242	261	242	263	0.95
5	13	3e-06	0.00023	22.8	0.6	1	23	274	296	274	296	0.98
6	13	0.00016	0.013	17.4	0.2	1	23	306	328	306	328	0.98
7	13	1.1e-05	0.00082	21.1	0.4	1	23	334	356	334	356	0.98
8	13	3.7e-06	0.00029	22.5	0.8	1	23	362	384	362	384	0.99
9	13	6.5e-05	0.005	18.6	4.6	1	23	390	412	390	412	0.95
10	13	0.00012	0.0089	17.8	2.0	1	23	418	441	418	441	0.95
11	13	5.9e-05	0.0045	18.8	5.7	2	23	448	469	447	469	0.96
12	13	3.1e-06	0.00024	22.8	0.5	1	23	475	497	475	497	0.98
13	13	1.5e-05	0.0011	20.7	3.1	2	23	504	526	503	526	0.94

Sequence Information

Coding Sequence: ATGGAGGACACGCACGTTGTTTATATGAAAACGGAGGAGGAAGTTTACGATGAGCAGATAAATGGAAACACTACCGAGTTGCAGCTTGTTCCGCTGATCGAAGTGGACGGTAATACGGATGTCGTGACGGCTATCGAAGTCACGACCGACACTGACGGTAACTTTAAGATAAGCACGATTGACCGAAGCAACCAACAAAGAGATATTTCGTTGGAAATCGAGCCGGAAAGTTACGAAGACGGAAGCCAAGTGGAGTACACGATTGAGGAGACGATCGTCGAACAGGAAGTAGACGAGATGGAAGACGAGGAGGACGGTGAGGAGGAAGAGGACGACGATCCCACTTACGAGGACACCGATTATATAAAGCACGAGGCAGACGACGAAGAGTTTGAGTGCGAGATGTGCCAAAGGTCGTTTAAATCGGCAGCTAGCCTAAAGCGGCATATAACCGTCACTCATGCTGTGGAGATAAATCCGGATGATCCTTTGGCATTTGAGCTGTGCATGTGCTGCGGAGAACCCATGGATTCGGCACATATGGCAGGCGACATAACGTGCGATCTGTGCGACAAGCGATTCGTGCTTCAGGAGAACCTCAACCGGCACACGAGCATCGAGCACAACGTCGGCGACGTCTACAGCTGCGTCGAGTGCAAGGAGACGTTCGACGGGAAGTCGGAACTGCTCGTCCATCTCGCCGAGCATCCGCTCTCGAAGCCGTTCTCGTGCAAGACGTGCAACAAGGACTTCACCAGGAAGTACCACCTCGACAGGCACGTGGCGCAGACCGGATGCGACGGCTCGCCGAAAAATGTCTTCAGCTGTCAGGTTTGCTATAAGGCGTTCGCTCGGAAGGATAACCTGCGAGACCACCTGCGCGCCCACGCCGGCCAGGtcaagaagaagaagattttCAACTGCAGTTACTGCGAGAAGGAGTTTCAAGGGAGCGGGTTGCTCGCCGTGCATTTAAGAACCCACACGGGAGAGAGACCGTACGCGTGCGACATGTGCCCGAAGCGGTTCCCGTCGTCCGGCGCGATGAAGAAGCACAGACGGATGCATACCGGAGAAAAGCCCTACGAATGCTCCGAGTGCCAGAAGAGATTCGCGGCAAAGGAGACGCTCAACAGGCACGTCAGGACGCACACGGGCGACAAGCCGCACTCGTGCCACTTCTGCGGCAAGAGCTTCATACAGGCGGCGCAGTTGCGCGCGCACATCTTCCATCATACGGGCGAGAACGCGTTCACCTGCCCGCACTGCAACAGGGCGTTCAACCGTCGCGTCCGCCTCACCATGCACATCCAGTTCGTGCACGAGGGCGCGCAGCCGATGCAGTGCGAGCACTGCAAGAAGTCCTTCTACAGGAAGGAGGACCTGCAGAGGCACCACTTGCTGCATAGCGGCGTTAAACCTTTCGAGTGCGTCGTCTGCCAGAAGACGTTCGCCGTAAAATCATCGCTAAAACTGCACATGCTCACGCACCGCAAGGAGCCGCCGTGCAGCTGCGACGAGTGCGGCAGGGCGTTCATCCGGCAGGACTGCCTGCTGCGTCACATGCGAGCGAAGCACCGCGACGTCCTCGAGGACATCATGGCGGGCGCGGAAAAGAAGCGACTCCAGCAGCAGCTGCTGAGCGTCGCGCAAGACATCGCCGCCGGCAACAAGCTTACGGTGCAGCACAGCACCGTCTGGGACGAGCTCACGCTCACCGACTCGATCAAGGAGCTCCTGACGCTGCTCGTCGACGAGTCTACGCTGAAGGCGTTTGGGTGGCCCGACACGCCCGTCGATAAGATGCTCGATTCGGTGATCAAGCGGTGCGGGCACAAGCCCGCCTCCGAGGAGGACTTTGACTACATCGGACGGATGCGCGAGAACGCCAAGTTGCTCTTCACGGTCGTGATCGATGACGACGCGATCAAAGCGTTGCTGAATAATCAGACGGTCGACGAGGTGATACTTCACGTGCTTCGGTTGGCGAAGAGCGAATAG
Protein Sequence: MEDTHVVYMKTEEEVYDEQINGNTTELQLVPLIEVDGNTDVVTAIEVTTDTDGNFKISTIDRSNQQRDISLEIEPESYEDGSQVEYTIEETIVEQEVDEMEDEEDGEEEEDDDPTYEDTDYIKHEADDEEFECEMCQRSFKSAASLKRHITVTHAVEINPDDPLAFELCMCCGEPMDSAHMAGDITCDLCDKRFVLQENLNRHTSIEHNVGDVYSCVECKETFDGKSELLVHLAEHPLSKPFSCKTCNKDFTRKYHLDRHVAQTGCDGSPKNVFSCQVCYKAFARKDNLRDHLRAHAGQVKKKKIFNCSYCEKEFQGSGLLAVHLRTHTGERPYACDMCPKRFPSSGAMKKHRRMHTGEKPYECSECQKRFAAKETLNRHVRTHTGDKPHSCHFCGKSFIQAAQLRAHIFHHTGENAFTCPHCNRAFNRRVRLTMHIQFVHEGAQPMQCEHCKKSFYRKEDLQRHHLLHSGVKPFECVVCQKTFAVKSSLKLHMLTHRKEPPCSCDECGRAFIRQDCLLRHMRAKHRDVLEDIMAGAEKKRLQQQLLSVAQDIAAGNKLTVQHSTVWDELTLTDSIKELLTLLVDESTLKAFGWPDTPVDKMLDSVIKRCGHKPASEEDFDYIGRMRENAKLLFTVVIDDDAIKALLNNQTVDEVILHVLRLAKSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00137212;
90% Identity: -
80% Identity: -