Basic Information

Insect: Aphodius granarius
Gene Symbol: su(Hw)
Assembly: GCA_963971325.1
Location: OZ020222.1:39892285-39895775[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.2e-06 0.00011 23.3 0.5 1 23 145 168 145 168 0.96

2 13 0.00017 0.015 16.6 0.5 2 23 200 222 199 222 0.95

3 13 0.00051 0.044 15.1 0.1 1 23 228 250 228 250 0.98

4 13 3.2e-05 0.0027 18.9 2.8 1 20 256 275 256 277 0.95

5 13 1.2e-06 0.0001 23.4 0.7 1 23 288 310 288 310 0.98

6 13 5.5e-05 0.0047 18.1 0.3 1 23 320 342 320 342 0.98

7 13 6.4e-06 0.00055 21.1 0.4 1 23 348 370 348 370 0.98

8 13 2.2e-06 0.00019 22.5 0.8 1 23 376 398 376 398 0.99

9 13 7.5e-06 0.00065 20.8 4.4 1 23 404 426 404 426 0.95

10 13 6.9e-05 0.0059 17.8 2.0 1 23 432 455 432 455 0.95

11 13 3.5e-05 0.003 18.7 5.7 2 23 462 483 461 483 0.96

12 13 1.9e-06 0.00016 22.7 0.5 1 23 489 511 489 511 0.98

13 13 8.7e-06 0.00075 20.6 3.1 2 23 518 540 517 540 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.2e-06	0.00011	23.3	0.5	1	23	145	168	145	168	0.96
2	13	0.00017	0.015	16.6	0.5	2	23	200	222	199	222	0.95
3	13	0.00051	0.044	15.1	0.1	1	23	228	250	228	250	0.98
4	13	3.2e-05	0.0027	18.9	2.8	1	20	256	275	256	277	0.95
5	13	1.2e-06	0.0001	23.4	0.7	1	23	288	310	288	310	0.98
6	13	5.5e-05	0.0047	18.1	0.3	1	23	320	342	320	342	0.98
7	13	6.4e-06	0.00055	21.1	0.4	1	23	348	370	348	370	0.98
8	13	2.2e-06	0.00019	22.5	0.8	1	23	376	398	376	398	0.99
9	13	7.5e-06	0.00065	20.8	4.4	1	23	404	426	404	426	0.95
10	13	6.9e-05	0.0059	17.8	2.0	1	23	432	455	432	455	0.95
11	13	3.5e-05	0.003	18.7	5.7	2	23	462	483	461	483	0.96
12	13	1.9e-06	0.00016	22.7	0.5	1	23	489	511	489	511	0.98
13	13	8.7e-06	0.00075	20.6	3.1	2	23	518	540	517	540	0.94

Sequence Information

Coding Sequence: ATGGATGAGGCGACGCATGTGGTTTATATGAAATCGGAGTGTTACGACGACCAGATAAATGGGAACACTACGGAATTACAACTTGTGCCGCTTATGGATGTCGATGGGAACTCGGATGTGGTTACCGCCATCGAGGTGACCACCGATACCGATGGGAACTTTAAAATAAGCACCATCGACCGCAGCAATCAACAAAGAGATATTTCCTTGGAAATTGAGCCGGAAAGTTACGAAGTAGACCCAAGCGAAATGCGGTATTCCGTAGAAGAAACAATAGTCGAACAGGAAGTTGAAGATATCGAAGAAGAACAGGAAGAACAGGGGGACGAAGAGGGAGACGAGGGGGGCGACGACGAGCAAGAGGATGATCCGTCTTACGATGACTCCGAATATATAAAGCGCGAGGACGATGATGTCGACGAGGAAGAGGAATATTCGTGCGAGATGTGCGAACGGACGTTTAAAACGCCGGCCAGTTTGAAGCGACACATAACCGTCACGCATGCTGTGGAGATAAATCCGGATGACCCATTGGCCTTTGAGTTGTGTATGTGTTGCGGGGAACCCATGGATTCCGCTCATATGacGGGCGACATAACCTGTGATCAGTGCGACAAAAAATTCCACCTTCCCGAAAACTTGGCCAGGCACCTCAGCATCGAGCACAACGAGGGTGACGTCTACGTATGCGTCGAGTGCAAACAGACGTTTGAAGAGAAAGCCGAATTGCTGCAACATCTTTCCATACATCCACTGTCCAAGCCTTTCTCTTGCAAGGTGTGCCACAAAGACTTCACACGCAAGTACCACCTCGACAGACACATAGCGCAGACCGGGTGCGATGGAACCCCAAAAAACGTCTTCACCTGTCAGGTTTGTTATAAGGCATTTGCCCGCAAAGATAATCTTAGGGACCATCTTCGTGCCCACGCAGGCCAAGTCAAGAAAAAGAAGGTTTTCAGCTGCACCTACTGTGAGAAAGAATTCCAAGGCAGTGGACTCCTCGCCGTGCATTTGAGAACTCATACAGGCGAGAGGCCGTACGCTTGCGACATGTGTCCGAAGAGGTTCCCGTCTAGCGGCGCAATGAAGAAGCACCGTCGTATGCACACCGGCGAAAAGCCGTACGAATGCTCCGAGTGTCAGAAGAGGTTTGCTGCGAAGGAGACGTTAAACAGGCACGTGCGCACGCACACGGGGGACAAGCCGCACTCTTGCCACTACTGCGGCAAGAGTTTTATACAGGCGGCGCAGCTGCGTGCCCATATCTTCCATCACACGGGCGAAAACGCGTTTACCTGCCCGCATTGCAACAGGGCCTTCAATCGGAGGGTTCGCCTCACCATGCACATACAGTTTGTGCACGAGGGGGCCCAGCCGATGCAGTGCGAACACTGCAAGAAGTCCTTCTATCGGAAAGAGGACCTGCAGAGGCACCATTTGCTACACAGCGGCGTAAAACCGTTTGAGTGCGTCGTTTGTCAGAAAACGTTTGCGGTTAAGTCTTCACTAAAGCTACACATGCTGACGCACCGTAAGGAGCCCCCGTGCAGTTGCGACGAGTGCGGGAGAGCGTTTATCAGGCAGGACTGCCTCCTGCGTCACATGCGTGCGAAACACAGAGACGTACTGGAAGATATAATGGCGGGGGCGGAGAAAAAACGCCTGCAGCAGCAGTTGCTAAGCGTGGCGCAAGATGTCGCCGCCGGGAATAAATTAAGCGTGCAGCACAGTACCGTCTGGGATGAGCTGACGCTTACCGATTCCATAAAAGAATTGCTGACCCTTTTGGTGGATGAGTCCACACTGAAAGCTTTTGGTTGGCCGGATACACCCGTGGATAAAATGCTTGATTCGGTGATCAAAAGGTGCGGGCATAAGCCTGCCTCGGAGGAGGATTTTGACTATATTGGACGTATGCGTGAAAATGCTAAGTTGTTGTTCACCGTGGTGATTGACGATGACGCGATCAAGGCCTTGCTGAACAATCAGACTGTTGATGAGGTCATTTTGCACGTGCTACGGTTGGCCAAGAGCGAATAG
Protein Sequence: MDEATHVVYMKSECYDDQINGNTTELQLVPLMDVDGNSDVVTAIEVTTDTDGNFKISTIDRSNQQRDISLEIEPESYEVDPSEMRYSVEETIVEQEVEDIEEEQEEQGDEEGDEGGDDEQEDDPSYDDSEYIKREDDDVDEEEEYSCEMCERTFKTPASLKRHITVTHAVEINPDDPLAFELCMCCGEPMDSAHMTGDITCDQCDKKFHLPENLARHLSIEHNEGDVYVCVECKQTFEEKAELLQHLSIHPLSKPFSCKVCHKDFTRKYHLDRHIAQTGCDGTPKNVFTCQVCYKAFARKDNLRDHLRAHAGQVKKKKVFSCTYCEKEFQGSGLLAVHLRTHTGERPYACDMCPKRFPSSGAMKKHRRMHTGEKPYECSECQKRFAAKETLNRHVRTHTGDKPHSCHYCGKSFIQAAQLRAHIFHHTGENAFTCPHCNRAFNRRVRLTMHIQFVHEGAQPMQCEHCKKSFYRKEDLQRHHLLHSGVKPFECVVCQKTFAVKSSLKLHMLTHRKEPPCSCDECGRAFIRQDCLLRHMRAKHRDVLEDIMAGAEKKRLQQQLLSVAQDVAAGNKLSVQHSTVWDELTLTDSIKELLTLLVDESTLKAFGWPDTPVDKMLDSVIKRCGHKPASEEDFDYIGRMRENAKLLFTVVIDDDAIKALLNNQTVDEVILHVLRLAKSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00138317;
90% Identity: -
80% Identity: -