Basic Information

Insect: Aphodius sticticus
Gene Symbol: -
Assembly: GCA_963966075.1
Location: OZ014510.1:49537345-49539987[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.014 1.1 11.3 5.8 1 23 155 177 155 177 0.98

2 16 0.07 5.4 9.1 2.3 1 23 183 205 183 205 0.97

3 16 4.8e-05 0.0037 19.0 2.7 1 23 211 233 211 233 0.98

4 16 0.00042 0.032 16.1 1.7 1 23 239 261 239 261 0.98

5 16 2.5e-05 0.0019 19.9 3.8 3 23 269 289 267 289 0.98

6 16 4.3e-05 0.0033 19.2 2.2 1 23 295 317 295 317 0.98

7 16 1.6e-06 0.00012 23.7 0.4 1 23 323 345 323 345 0.99

8 16 2.5e-05 0.002 19.9 0.4 1 23 351 373 351 373 0.98

9 16 0.00035 0.027 16.3 1.4 1 23 379 401 379 401 0.97

10 16 4.3e-06 0.00033 22.4 1.5 1 23 407 429 407 429 0.99

11 16 1.5e-07 1.2e-05 26.9 0.2 1 23 435 457 435 457 0.98

12 16 0.00044 0.034 16.0 4.9 1 21 463 483 463 485 0.94

13 16 0.00046 0.035 16.0 0.1 1 23 491 513 491 513 0.99

14 16 2.4e-07 1.8e-05 26.3 3.3 1 23 519 541 519 541 0.98

15 16 0.0056 0.43 12.5 1.7 1 23 547 569 547 569 0.98

16 16 4.9e-05 0.0037 19.0 3.6 1 23 575 597 575 597 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.014	1.1	11.3	5.8	1	23	155	177	155	177	0.98
2	16	0.07	5.4	9.1	2.3	1	23	183	205	183	205	0.97
3	16	4.8e-05	0.0037	19.0	2.7	1	23	211	233	211	233	0.98
4	16	0.00042	0.032	16.1	1.7	1	23	239	261	239	261	0.98
5	16	2.5e-05	0.0019	19.9	3.8	3	23	269	289	267	289	0.98
6	16	4.3e-05	0.0033	19.2	2.2	1	23	295	317	295	317	0.98
7	16	1.6e-06	0.00012	23.7	0.4	1	23	323	345	323	345	0.99
8	16	2.5e-05	0.002	19.9	0.4	1	23	351	373	351	373	0.98
9	16	0.00035	0.027	16.3	1.4	1	23	379	401	379	401	0.97
10	16	4.3e-06	0.00033	22.4	1.5	1	23	407	429	407	429	0.99
11	16	1.5e-07	1.2e-05	26.9	0.2	1	23	435	457	435	457	0.98
12	16	0.00044	0.034	16.0	4.9	1	21	463	483	463	485	0.94
13	16	0.00046	0.035	16.0	0.1	1	23	491	513	491	513	0.99
14	16	2.4e-07	1.8e-05	26.3	3.3	1	23	519	541	519	541	0.98
15	16	0.0056	0.43	12.5	1.7	1	23	547	569	547	569	0.98
16	16	4.9e-05	0.0037	19.0	3.6	1	23	575	597	575	597	0.98

Sequence Information

Coding Sequence: ATGGAGAcggttataaataatataaaaatcgaACCAGATCAAGATTTTTACGGGTACAATCAAGTAAAACAAGAATACTACAACCCGTATAGTTACTACAACCATTTCTACGAACAAAACAAGCGTATCGATTACAATTTTAGCGACAAAATGGGTTTAAATCCGCTGTATTACAATTATAACAGGCAATTTCAATATTCGCAGCCGATTTCAAACTTATCATCGAATATAAACCAAAATTATGGTACCGAATTCgaatgtaaatatattaaaGAAGAAAAAGACCAACCAGACGATTTTTTTGTTTCGAAAAAGGCTGTCGAACCACAAAATTTACAAGGGAATTCTGATGATTATAGGGATCATGTCACCTCTGTCTTTCTTGACAAGTTTAATGTTTCACATCATTTCATGTGTTCAAATAAAGAAATTAGCGAATCTGTAGAAGAATTGAGTAAGAAACACCAGTGCGACGTCTGTTCGAAACGATTCAAGTGCAAATCGTATTTGATGGCGCATAAGAACGTTCACGCGGGTATTTTTCCGTTCAAATGCGGTATTTGCGATAAAACCTGTCTGACGAAGCAACAATTAGGTTACCACGAGAAAATCCATAGCGGAAATCGACCGTTTAAATGCGAAAACTGCCCGAAAACGTTCATGAGCCCCAAGGATTTACGACACCACAATCTCACACATACCGGTGAAAAACCGTTCATCTGTGAGGTCTGCAATCATGGATTTTCGCTAAAAAAGAACTACGAAACGCACCTTCGGATTCACACGAAGGAAAAGCCGTATGGTTGTAAGGATTGCGGGAAATTATTCAGTCGCATGGATCATTTAAAACATCACATTTTGACGCATACTGGTGAACGTCCGTTTAAATGTGATTTGTGTACGAAGACGTTTGCGAGGAAGTTTGTTTTGATGCTCCACATGCGGTACCATAACGGGATTAAACCGTATACGTGCGACGTTTGCGGAAATGCTTTTGCGGAGAAGAATACGTTGACGAGGCATATGCGTACGCATACTGGGGAGAAGCCGTATCCTTGTGATCAGTGCGAGAAGTCTTTTGCGGGTCGAAAGGATTTGTTGAGTCATTTGAAGACACACGTCGACGAGAAAGAGTTTGATTGTAAAGTTTGCTTGAAGAGTTTTAAGACGCGGCAGTATTTGTTGCTGCATGTGAAGATTCACGAGGAGGATAAACATTATAGGTGCGATTTTTGCGGGAAGGGATATAATACGAAGGAGAAGCTGAAGCTACATATCAGATCACACACGGGCGAACGACCGTTTCCCTGTAACATCTGCGATAAAGCCTTTATAACAAAAGGCGAACTCAAACGACACGTCATGACGCACACGGGGGAGCGGCCCCATCAATGCACCGTCTGCCCGAAATCATTCATCTCGAAGGGAAAGCTAAACCGACACACAAAATGCCACTCCTCCGATAAAGAATACAAATGCCTCGTCTGCGCAAAAGAATTTGCGGTTAGAGACGGTCTCGTAACGCATATGAAAATCCATAACAACGACAAAGCCTTTCCCTGCCACCTCTGCGATAAACGATTCATAACCCCCGAGCATCTGCGGAACCACATTCGCACCCATACAGGCGAAAAACCGTACGAATGCCCGATCTGTTTACGCAGATTTTCGTGCCGCGGAAATCTGAGCACGCACGTGAAATTGCATTCAGGTTTGAAACCGCATAAGTGCGACGTTTGCGATACGTGTTTTGCGCAGAAAAGTGCGCTGTTAaaccataagaagatacatAATCGGTCTAGCACTGAAACAACGCCATCTGTTGGGGTTTTGGCGAATGACGAGGATAAAATTAAGGTTAAAGAAGAGTACGATGACGTTCCGAAAAATCCCGAGTCTTGTTTCGATGGTTCGTCGAATCTCGTCAAAGAAGAAGAGTCGCAGGTTTCCGATGTCAAACAAGAAAGTGCTTTTTGGTATTAA
Protein Sequence: METVINNIKIEPDQDFYGYNQVKQEYYNPYSYYNHFYEQNKRIDYNFSDKMGLNPLYYNYNRQFQYSQPISNLSSNINQNYGTEFECKYIKEEKDQPDDFFVSKKAVEPQNLQGNSDDYRDHVTSVFLDKFNVSHHFMCSNKEISESVEELSKKHQCDVCSKRFKCKSYLMAHKNVHAGIFPFKCGICDKTCLTKQQLGYHEKIHSGNRPFKCENCPKTFMSPKDLRHHNLTHTGEKPFICEVCNHGFSLKKNYETHLRIHTKEKPYGCKDCGKLFSRMDHLKHHILTHTGERPFKCDLCTKTFARKFVLMLHMRYHNGIKPYTCDVCGNAFAEKNTLTRHMRTHTGEKPYPCDQCEKSFAGRKDLLSHLKTHVDEKEFDCKVCLKSFKTRQYLLLHVKIHEEDKHYRCDFCGKGYNTKEKLKLHIRSHTGERPFPCNICDKAFITKGELKRHVMTHTGERPHQCTVCPKSFISKGKLNRHTKCHSSDKEYKCLVCAKEFAVRDGLVTHMKIHNNDKAFPCHLCDKRFITPEHLRNHIRTHTGEKPYECPICLRRFSCRGNLSTHVKLHSGLKPHKCDVCDTCFAQKSALLNHKKIHNRSSTETTPSVGVLANDEDKIKVKEEYDDVPKNPESCFDGSSNLVKEEESQVSDVKQESAFWY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00981419;
90% Identity: iTF_00981419;
80% Identity: -