Asti001974.1
Basic Information
- Insect
- Aphodius sticticus
- Gene Symbol
- -
- Assembly
- GCA_963966075.1
- Location
- OZ014506.1:24848547-24878646[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-11 1e-08 36.1 0.0 1 39 351 390 351 394 0.90 2 4 9.4e-13 9.8e-10 39.4 0.1 1 39 405 443 405 446 0.95 3 4 1.2e-18 1.2e-15 58.3 0.0 1 45 460 505 460 505 0.98 4 4 3e-16 3.1e-13 50.6 0.0 1 40 512 552 512 556 0.92
Sequence Information
- Coding Sequence
- ATGGAATCGGCTTTTTTTCCAGCATCAGCTCTCGCTCTGCACGCCAGACCGCCAGCCGCCACAGTATTACGCAACACTAAATTTCCGAAAACTAGAACTAGACCTCCTAGGTGGCGAATGATGCGAAGAAGGGTAAGCGAAAGGTGGCAGTATGTAGGTCGGGATTCCCTCAGCGAAGGATGCGATGAAGAGGAGGCGAAATCGCTCCTCAAGACGGCAGatcaattgaaaataaaaggGCTGTGCGAATCGCCGGAGGAGGACGACGACGCGACGGACAGTTTCGCATTCGACGGGAGGAAGCACAACAAAATCCGAAGAATCGTCTCGCCGAAGCCACACTACAAAGTAACCGAGAACAGTAGGAAGCACAAGTACAGGAGGCCGGAGAGAAGACGCTCGCCGGAGAACCAGGAGGACAAGGAGAACAACAACAAGGACAATGCGGCCGCACTGAACAACAATTCGTCCGAAGACGAGAATGAGATGCCAATAGCTTTGGATGAGGAGAGCAGGAAACGAAAGCTGAGCGAGTCGCAGACTAAACCCATTAATATGACTAGTCATGGGCCATTGGCGGAACAGACTTTCTCATTCTCTCAGTTCGGAGTGGATAACGATGATTTTCCACCGGAACCGCCGGCTCCAACCGCTATCCCTGTCGGGAACGTAGACATGCATGACCACTCTCCCACTAGAACATTACTCACTAACTCCTCAATGCATAGGACTGATCTATCAGATTCAATCGTTAAGTATGTTGATATTAAAAAGGAGGCGGACATCAAGTTCGAAACGCTGCGAGGATACGACCGGGAACCGTCAATATTGGACATGGAGGCGTCGCAGATGTCCGGAGCCGACCACTCCATGGACAGCCATGATGACACGAAACCCGAACTCCATACCATGATGATTACCCCGGAATTAATGGGCATGATGCCGCATTCGCTTCAACACGGATTAGATTCTGGAGATGCTCATTTGAAGAGTAATGGCCATTCGGATCATTCAGGTGGTAGAGCACATGGTGGGGGGCCGAAAACATGGACACAGGAGGATATGGAACTGGCCTTAGATGCACTTAGAAACCACAATATGAGTTTAACAAAGGCATCAGCAACATATGGAATTCCTTCCACGACGTTATGGCAACGTGCGCATAGGTTAGGTATAGATACTCCGAAAAAAGAAGGTCCAACCAAATCATGGACGGAAGAGAATTTGAATTCTGCCCTAGAGGCGTTACGAACGGGAACTATTTCGGCGAACAAGGCCAGTAAAGCCTATGGTATTCCTAGCAGTACTCTGTACAAAATTGCAAGGCGGGAAGGAATTCGACTAGCGGCTCCTTTCAATGCTGCACCCACCACCTGGACTCCGGAAGATCTGGAAAAAGCTTTGGAATCTATTCGCTCTGGACAGACGTCTGTTCAAAAAGCATCGACTGAATTTGGAATTCCAACGGGTACGCTTTATGGACGATGTAAGAGGGAGGGTATCGAGTTGTCAAGGTCAAATCCGACTCCATGGTCGGAAGATGCCATGGGCGAGGCGTTAGAAGCTGTGAGATTAGGTCATATGTCAATAAACCAAGCTGCCATACACTACAATTTACCATACTCATCACTTTACGGCCGGTTCAAGAGAGGCATAAAGTATGAAACCGACAACATAGACGCAAACTCGGACAGCCAGTCTCATCTAGATGCTCAATCGCACATGATGGATTACTCCAACTCCCATCAGCAGATTCAGTATCAGCAGCATCCATCGAACAGCTGA
- Protein Sequence
- MESAFFPASALALHARPPAATVLRNTKFPKTRTRPPRWRMMRRRVSERWQYVGRDSLSEGCDEEEAKSLLKTADQLKIKGLCESPEEDDDATDSFAFDGRKHNKIRRIVSPKPHYKVTENSRKHKYRRPERRRSPENQEDKENNNKDNAAALNNNSSEDENEMPIALDEESRKRKLSESQTKPINMTSHGPLAEQTFSFSQFGVDNDDFPPEPPAPTAIPVGNVDMHDHSPTRTLLTNSSMHRTDLSDSIVKYVDIKKEADIKFETLRGYDREPSILDMEASQMSGADHSMDSHDDTKPELHTMMITPELMGMMPHSLQHGLDSGDAHLKSNGHSDHSGGRAHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYETDNIDANSDSQSHLDAQSHMMDYSNSHQQIQYQQHPSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00980857;
- 90% Identity
- iTF_00980857;
- 80% Identity
- -