Basic Information

Insect: Aphodius granarius
Gene Symbol: L
Assembly: GCA_963971325.1
Location: OZ020230.1:5410823-5415935[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.2e-06 0.00028 22.0 0.6 1 23 73 95 73 95 0.98

2 18 0.18 16 7.1 6.0 1 23 101 123 101 123 0.97

3 18 1.7e-05 0.0015 19.7 3.4 1 23 129 151 129 151 0.99

4 18 0.0012 0.1 13.9 1.2 1 23 157 179 157 179 0.97

5 18 0.00048 0.041 15.2 0.1 2 23 205 227 204 227 0.95

6 18 0.023 1.9 9.9 0.1 3 23 255 276 253 276 0.94

7 18 0.0018 0.16 13.4 0.3 1 23 299 322 299 322 0.95

8 18 0.032 2.8 9.4 0.0 2 23 407 428 407 428 0.96

9 18 0.0072 0.61 11.5 5.1 3 20 438 455 437 459 0.89

10 18 0.012 1 10.8 0.3 1 23 464 487 464 487 0.92

11 18 4.1 3.5e+02 2.8 0.3 1 11 494 504 494 508 0.89

12 18 0.026 2.2 9.7 4.1 1 23 551 574 551 574 0.91

13 18 0.28 24 6.5 0.2 3 23 618 639 616 639 0.89

14 18 0.0001 0.0086 17.3 4.6 2 23 653 674 652 674 0.97

15 18 0.00021 0.018 16.3 0.4 1 23 683 705 683 705 0.98

16 18 0.0034 0.29 12.5 0.2 2 23 847 868 846 868 0.95

17 18 0.02 1.7 10.1 0.1 1 23 876 898 876 898 0.95

18 18 0.0016 0.14 13.5 1.2 1 23 905 927 905 927 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.2e-06	0.00028	22.0	0.6	1	23	73	95	73	95	0.98
2	18	0.18	16	7.1	6.0	1	23	101	123	101	123	0.97
3	18	1.7e-05	0.0015	19.7	3.4	1	23	129	151	129	151	0.99
4	18	0.0012	0.1	13.9	1.2	1	23	157	179	157	179	0.97
5	18	0.00048	0.041	15.2	0.1	2	23	205	227	204	227	0.95
6	18	0.023	1.9	9.9	0.1	3	23	255	276	253	276	0.94
7	18	0.0018	0.16	13.4	0.3	1	23	299	322	299	322	0.95
8	18	0.032	2.8	9.4	0.0	2	23	407	428	407	428	0.96
9	18	0.0072	0.61	11.5	5.1	3	20	438	455	437	459	0.89
10	18	0.012	1	10.8	0.3	1	23	464	487	464	487	0.92
11	18	4.1	3.5e+02	2.8	0.3	1	11	494	504	494	508	0.89
12	18	0.026	2.2	9.7	4.1	1	23	551	574	551	574	0.91
13	18	0.28	24	6.5	0.2	3	23	618	639	616	639	0.89
14	18	0.0001	0.0086	17.3	4.6	2	23	653	674	652	674	0.97
15	18	0.00021	0.018	16.3	0.4	1	23	683	705	683	705	0.98
16	18	0.0034	0.29	12.5	0.2	2	23	847	868	846	868	0.95
17	18	0.02	1.7	10.1	0.1	1	23	876	898	876	898	0.95
18	18	0.0016	0.14	13.5	1.2	1	23	905	927	905	927	0.98

Sequence Information

Coding Sequence: ATGCTGTTTAAGGGAAACAGTTCTCGGTTGGAAATGCTAATCGAAAAGCTCCAGGGTAACAGGGAAAACGCAAATTCGGATTGTGCAGTTCCAGGACAAGCGAGCTCACCATCGAGTAGCAACCAGTCTTCGCCGACCAGTTGCCAAAGTTTTGTTCTAAGTGATGCAACTGATGTCGACGAGGTGTACACCATGGGGGCTACAGCAACGACACCTTACGAGTGCAACATCTGCAAGAGAGCTTTCTCGAGATCATCTGTCTTGAGCAAGCACTTACAGATCCATACCGATCAGCTGCAGTTCAGCTGTCCGTATTGCAGGCGTCTTTTTAAGCACAAGAGGTCACGTGATAGGCACACCAAACTGCACACGGGCGACAAGAAATACAAGTGCGTCCACTGTGATTCCGCATTTGCAAGGAGCGATCATTTGAAAATCCACTTAAAAACTCACGACAATAAGAAGCCCCACCAATGTGAGCTATGCAATAGAGGATACAACACTGCTGCTGCATTGGCTTCACATCAACAACATCATTCCAAAAAAGACCATAGGTGTGGGAGTAGTTCTAGCAGAGCTACCACTACAAGTACTCCTAGTCCTGGTCAAATCAAGTGTCCACAATGCAGTGAAGTATTTGCCAAAACCGAACAACTACAAAGTCACATAGCAATAAAACACAAACCTCCAACTCCTCAAAAGACCCAAGAAACAAATTCGTCGAATCCTGCAGGGTCTGATATGGAACTACCTAAAATGGCTTGCATGTATTGTGGTAAAGATTTTCCAAATATGACTTTAATGTATCAGCACATAAACGCTGATCATAGCGCGATATTTATTCCTCAAAATTCGTCTTATTCGACAAGTAAAGATACGTCGCCGAAGTTGACGTATCCTTGTGACTTATGTACGATGAAATTTGAGACATCGCAAACATTAAAAGAGCATTTAGAGAATATTCATTGGAAGATGAATGTTGAGTTCAGTGCGACGACGTCTCAACAAGCAAAAGCGACCGACTTAAGCAGGAAAAGGAAAATTGATGATCTTGATGATGGTGCTAAAAGGAATTCGCCATCAGCTACTGGTAGTCCTTATGATGCTAATGATAAGCCTTGTATATGCTCGTACTGTTATGCCCAAATGCCAAATTTCAAAAGTTTTCTGGTCCACATGGAAAGTCATGTGTCCGTAAGCGCTTCAAACTTTGTTGGATATTGCCCGATTTGTGGAGAACCTGGCAGAGATCCAATAGAATTCAGTTCGCATATTTTTAGTCATGTCGTCAGCGATGTAACTGGACGATGTTGCCATCAATGCAAGAAATCTTTCGACCAGTTAGATCAGTTACAAAAGCACAACTTCGAAGCGCATTCTCAAAGCCTTTTCAAATGTACCATTTGTGGAGAGTTTTTTGAAAGTGAAATAGCCATACAGgtgcattttaataataaacactGCAATGAGTGCAAGCATTATCGATGTAATTTGTGTCCCCAACAATTCTTCCATGACCGTTTGACAGCTGATTTGCATGTGTCGATGAGACACGGCAACCAATTATCTGGAAACATTAGGAATCAGCAAGTTGTAAATAAATTTGCTCCATCATTCAACGAAATAGACTCTAGGAGGGTCTATCAAACTTACCAATGTCCTTTctgtcaaaaatcttttaaggaCGAGTACTTGCACCATCTCCACATACTTAAGGAGCACAATGACACGCGCGAGGGTGAATATTTGGTGGATGTGACAGCTTTGACGGCGGGGTCTCCAAACTTCTCGTACAAGTCGGTATCTCCTCAAGAAGGCTTGAAAATTGACCTAAAATTGATTTGCTTGAACTGCGACGTTTGTAACAGGGCCGACTTCAGCAACGAATCGGAACTGCTGGCTCACAAGAAACTACATCAGTCCCACACAAAAACGAAGGTTGGTTCAGTCAGTCTTCAATGCGCGTATTGTAATGAACATTGCAAGTCGCGCAGTGATCTAGAAAATCATATGAAGACACATCAGGTAACATGCGGTAAAGGGAAGCATAAATGCAATATTTGCGATGAGATATTTGCTTCCTCCATTACATTAGCTGATCACAAGCTTACCCATTGCAAGATTGTATCTGGAAACACTTGCACGCAATGCAAGGCTATCTTGGAAGACGAACAATGTTTCTATACGCATCAAATGCAACATAACAACTCTTCAGCAATCACGAAAAACAATTCTCAAATACCTCTACCAGCGAACTGCGTGATCTGCTGTCAAACACTTCAAACTGATGTTGAGATGAGATTGCACGCGAAGTTCCACTTGAGGCATCTGCTCCAAAAGGAGTTGCTTTGCGTCATTTGTAACAAAATCTATGATAACCAATTATCGGATAAGAGCAATGGCGTTTCAATATCAGTTTGTAAAGACTGCAAGACCACCAATGGGGTCGGATACCAACTCCAAAAGGATTTTAAACACTACAGCTCTTTCGATAAAGAAGAAGAGTTGAAATTTAGAAATATCGAAGATTCTAGTTTGGTTTGTAAGTTGTGCAGAAATGTATTTTCATCGCAAGTGAAGCTTCAAGTGCACTTGATTGAACACAACTTCATGGGTATGGGTCAATTTAGGTGTTACGTGTGTTCTTCTGTGTTCACTACCGCGAATGGACTTCAAGGACATATTGTTGGCCATGGGTTGAACCAGAGTCCTTACGAGTGCAACGACTGCAAGATGAAATTCTTCTTTGAAACTGAACTAGAGAATCATAGAATATCGCATGCAATAGCCATGCAGAAAGTAGCTGAAATAAAAACCGAAAAACAATACAAGGCCTGCGGTAATTGCTCTGGTGTTTACTTGGAGAGTTTCTTACCTGAGCATCTTGAAACTTGCTGTAAGGTAGAGATTAAAACTGAAGACAATAGTAACGATACTAACGATGAGAGTGAAAGAAAGAACTGTTTTCAAGCTAGTGACATAGATCCGAAAGAAGAGAGGCAATAA
Protein Sequence: MLFKGNSSRLEMLIEKLQGNRENANSDCAVPGQASSPSSSNQSSPTSCQSFVLSDATDVDEVYTMGATATTPYECNICKRAFSRSSVLSKHLQIHTDQLQFSCPYCRRLFKHKRSRDRHTKLHTGDKKYKCVHCDSAFARSDHLKIHLKTHDNKKPHQCELCNRGYNTAAALASHQQHHSKKDHRCGSSSSRATTTSTPSPGQIKCPQCSEVFAKTEQLQSHIAIKHKPPTPQKTQETNSSNPAGSDMELPKMACMYCGKDFPNMTLMYQHINADHSAIFIPQNSSYSTSKDTSPKLTYPCDLCTMKFETSQTLKEHLENIHWKMNVEFSATTSQQAKATDLSRKRKIDDLDDGAKRNSPSATGSPYDANDKPCICSYCYAQMPNFKSFLVHMESHVSVSASNFVGYCPICGEPGRDPIEFSSHIFSHVVSDVTGRCCHQCKKSFDQLDQLQKHNFEAHSQSLFKCTICGEFFESEIAIQVHFNNKHCNECKHYRCNLCPQQFFHDRLTADLHVSMRHGNQLSGNIRNQQVVNKFAPSFNEIDSRRVYQTYQCPFCQKSFKDEYLHHLHILKEHNDTREGEYLVDVTALTAGSPNFSYKSVSPQEGLKIDLKLICLNCDVCNRADFSNESELLAHKKLHQSHTKTKVGSVSLQCAYCNEHCKSRSDLENHMKTHQVTCGKGKHKCNICDEIFASSITLADHKLTHCKIVSGNTCTQCKAILEDEQCFYTHQMQHNNSSAITKNNSQIPLPANCVICCQTLQTDVEMRLHAKFHLRHLLQKELLCVICNKIYDNQLSDKSNGVSISVCKDCKTTNGVGYQLQKDFKHYSSFDKEEELKFRNIEDSSLVCKLCRNVFSSQVKLQVHLIEHNFMGMGQFRCYVCSSVFTTANGLQGHIVGHGLNQSPYECNDCKMKFFFETELENHRISHAIAMQKVAEIKTEKQYKACGNCSGVYLESFLPEHLETCCKVEIKTEDNSNDTNDESERKNCFQASDIDPKEERQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00981498; iTF_00138399;
90% Identity: iTF_00981498; iTF_00138399;
80% Identity: -