Agra020109.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- -
- Assembly
- GCA_963971325.1
- Location
- OZ020225.1:18693624-18701019[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00079 0.068 14.5 0.9 1 23 294 316 294 316 0.94 2 13 10 8.6e+02 1.6 0.1 1 21 321 343 321 347 0.88 3 13 0.088 7.6 8.0 1.2 2 23 406 428 405 428 0.90 4 13 0.0089 0.77 11.2 5.3 1 23 434 456 434 456 0.98 5 13 3.4e-05 0.003 18.8 0.6 1 23 461 484 461 484 0.91 6 13 1.9e-05 0.0016 19.6 4.7 1 23 490 512 490 512 0.98 7 13 1.9e-05 0.0016 19.6 1.2 1 23 518 540 518 540 0.93 8 13 0.0034 0.29 12.5 2.9 1 23 546 568 546 568 0.98 9 13 3.1e-06 0.00026 22.1 0.3 1 23 574 596 574 596 0.98 10 13 4.5e-06 0.00038 21.6 4.7 1 23 602 624 602 624 0.98 11 13 0.00036 0.031 15.6 4.7 2 23 631 652 630 652 0.97 12 13 0.00019 0.017 16.4 1.0 1 23 658 680 658 680 0.98 13 13 1.2e-06 0.0001 23.4 1.0 1 23 686 708 686 708 0.98
Sequence Information
- Coding Sequence
- ATGGAGGTTACTACTTTGTTATGTGACTCATCTTATTGTCGATTGTGCGGGCaagaaaatgaaaaatgcaGCAGCCTTTTTGAGTTGCAAGAAAACAAACACTATTTAAGTGATTTGGTGAATCGATATTTACCGCTGAAGGTTACAGATGACCGTAAGTTTCCCGCAAAAATATGTCcaggatgtattttccaattagAAGCGACAAAATCGTTTTTTGATTTGGTGATTAAGGGTCAAATTACGCTTAGAGACTTGTATGCGAAACAACAAGAGACATTTAAACGACAAGAGAAACAACGGCAACAGTTAGAGAACGCTCTAAAATTGGTGAATCCGTCCTCTAGTATAGGCGCCTATACAATACAAGAAGACGAAGTTGGCGAGAAGATATTAATACAAATTTTGTCGGACGGTCCCTTATTTTCACCCGAACACGAATTATCTCTGAAAACCGAAGGAAGAGAAAAGCCAAGAAGGAAGAGGGGTCGACCACCAAAACCTCCGTCAGAAGACAATAAAGAAAACGATGCTCAGAAAGATGAACAAGAAGATGACGCGGAAATTGATGGAGACAgccgaagaagaaggagaattAAAGTTCCGTCACGTTTGCAAGAAACGTTACAAGGTAAAGAAATGGACCGTATTTTCAAGCAAGAAGGAGTCATAGACGATGACGAGTCACTCTCGGATGACCCTGATGACCCAACAACCGTTGATATTAATGATAAAAGTATTAATGAAATCATCGGGCATATGGAAGATAAAGACGGGGGAGATTTAGGAGAATTAGTTGTCTTacacaaaacaacaaacaaaGTCAAAATACGACCTAAAAGCACGCCCGgcGGAGCCGCCAGTAAACGAAAAAGGAAATTTGAGTGCGATATATGCAGCCGTGTATTTTCACATGCAGGACGGTTAGAGGTGCATAAATCTTTCCATAGAAATGTGAACTACATGTGCGGAACGGCTGGCTGCGGTATGCAGACCGATTCGAGGGAGGCCGTCGAGGAGCATCACAAAGAAACCGGACATTCTGGGGTTACGTTGCTCGAAACTCTTGATTTTGAGATAACGGAACAGCCGGATCAGAATAAAGAAGTGCTGTTAGAAAACGCACAAATTACGATTGAAAATCCAGTGAAGGAAGAGGAACTTGTGTCCAACTTTCAACCAGTGAAGAGCAGCCCAGAAAAAGAAGAACGTACATCCTGCAAAATATGCGATAAAGGCTTCTCTTGTAAAcagaactacgacattcacgtcaACGCTGTCCACAAACGACAGAAGCCTTACAAATGCGAAAAGTGTAACAAAACGTTTCCGTACATCTCCAGCTATAAGTGTCACATGCAGCAACACTCGGACAAAATATTCCCGTGCGATATCTGCGACAAGGTTTTCAACCACTCCAGCAGTCTCGTTTACCACAAGGAGGCGGAGCATAACAACGGACTGCGATTCGTCTGCAGTAAATGTAAGAAGACTTTCAAGCATAAGCAATTGCTCCTGCGGCATCAGTTGGTGCATTCGAATGTGCGACCGCACGTCTGCAAGTATTGCGACGCAAGTTTCAAGACGCGCGCCAACCTGCTCAACCACATGCCAACGCACACTGGCGAGCGCAAATACTATTGTAATTTGTGCCCGAACACGTTTGCCCACAAGACGTCGCTCACCTTCCACATGCGATGGCACAACGGGTCAAAACCGTATGAGTGCGACGTTTGCTTGAAGTCGTTCTCGCAAAAGGGGAATTTGGCAGAACATAAACGGATCCACACAGGAGAAAAACCGTTCACTTGCAATCAGTGCGACAGGAAATTCACGACCTCGTCGCAGTATAAGAATCACTTAAAACGGCATACAGGTGAACGACCATGGCAGTGTGAATACTGCTCGAAAACGTTCTTTCATAAAGACACCTGGAAGTCGCACACAAGACGGCACAGTAATGAACGGCCTTTCCAGTGCAACCAGTGCATGAGAGCGTTTACGGAACAATGGGCGCTGAAGAAGCACCAACGTCTGCACACCGGGGAAAAGCCGTACGTGTGCGAATTCTGCAATAAGAAGTTTGCCGACTCTTCAAATTTAGCAAAGCACAAAAAGATCCACATGAGCAAGATCAACCAGTCCGAGAAGAACAACGGCACAAATATTAAGATCATCACATCGGAGCAAGGCGAAAAGATTTTGTACTTGACGTACGATGACGGAACAAATGATAACGACGAGCCGCAAACTGTCGTACATATTATGGATTCGCTCGATGACATGCCCCCTTCAGTTTGTCAGGATCCTGATGATGTTAGTATCGTGACAGCGGAGAGAATTGAACAGGATGGCTGTGAAGATTTTAGTTTGGATGCCTCTTTACAATTGCAGCAAGTGATAGATAATGATGGAAATCCTGTAAACATTACTACAGAAACTGGAGATGTTATAAAAGTTGTGATGAGTATAGAAAATGGGCAGCAGGCAATACAAGGTTTATTAAGTGACGGCACCTTAGTTCCTATTGATTTGGTAATGCAAGATGGAAAGTTGATGTCGGCCTCACTCGCCGAAGTAACTAAAGAAGATAAATTTGATACGGATGATAATCTAACCAAAGACTTATCTGTTCCACCTATCGAATCGATGCTGGAGAGCAATATGCAGTTTTTGTCAGAGGACGGGCAAAAGTTAGAGAGCAGTATTCAGTTTTTGTCTGAGGATGGACAAAGCCTATGCTTTGTGGCGACGTACAACTCAGATGATGTTGTTAATTCGGAATATATTTGA
- Protein Sequence
- MEVTTLLCDSSYCRLCGQENEKCSSLFELQENKHYLSDLVNRYLPLKVTDDRKFPAKICPGCIFQLEATKSFFDLVIKGQITLRDLYAKQQETFKRQEKQRQQLENALKLVNPSSSIGAYTIQEDEVGEKILIQILSDGPLFSPEHELSLKTEGREKPRRKRGRPPKPPSEDNKENDAQKDEQEDDAEIDGDSRRRRRIKVPSRLQETLQGKEMDRIFKQEGVIDDDESLSDDPDDPTTVDINDKSINEIIGHMEDKDGGDLGELVVLHKTTNKVKIRPKSTPGGAASKRKRKFECDICSRVFSHAGRLEVHKSFHRNVNYMCGTAGCGMQTDSREAVEEHHKETGHSGVTLLETLDFEITEQPDQNKEVLLENAQITIENPVKEEELVSNFQPVKSSPEKEERTSCKICDKGFSCKQNYDIHVNAVHKRQKPYKCEKCNKTFPYISSYKCHMQQHSDKIFPCDICDKVFNHSSSLVYHKEAEHNNGLRFVCSKCKKTFKHKQLLLRHQLVHSNVRPHVCKYCDASFKTRANLLNHMPTHTGERKYYCNLCPNTFAHKTSLTFHMRWHNGSKPYECDVCLKSFSQKGNLAEHKRIHTGEKPFTCNQCDRKFTTSSQYKNHLKRHTGERPWQCEYCSKTFFHKDTWKSHTRRHSNERPFQCNQCMRAFTEQWALKKHQRLHTGEKPYVCEFCNKKFADSSNLAKHKKIHMSKINQSEKNNGTNIKIITSEQGEKILYLTYDDGTNDNDEPQTVVHIMDSLDDMPPSVCQDPDDVSIVTAERIEQDGCEDFSLDASLQLQQVIDNDGNPVNITTETGDVIKVVMSIENGQQAIQGLLSDGTLVPIDLVMQDGKLMSASLAEVTKEDKFDTDDNLTKDLSVPPIESMLESNMQFLSEDGQKLESSIQFLSEDGQSLCFVATYNSDDVVNSEYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00981468;
- 90% Identity
- -
- 80% Identity
- -