Basic Information

Insect: Aphodius granarius
Gene Symbol: -
Assembly: GCA_963971325.1
Location: OZ020223.1:10961411-10968754[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2e-05 0.0017 19.5 1.2 1 23 135 157 135 157 0.97

2 15 0.0091 0.78 11.1 5.9 1 23 163 185 163 185 0.96

3 15 0.00013 0.011 16.9 0.1 1 23 289 311 289 311 0.98

4 15 0.0047 0.41 12.0 0.1 1 23 317 340 317 340 0.97

5 15 0.00018 0.015 16.5 3.4 1 23 364 386 364 386 0.97

6 15 0.003 0.25 12.7 0.0 1 23 399 421 399 421 0.95

7 15 0.99 85 4.7 0.2 1 23 427 450 427 450 0.95

8 15 0.016 1.4 10.3 6.2 1 23 457 479 457 479 0.94

9 15 5e-05 0.0043 18.3 4.4 1 23 485 507 485 507 0.97

10 15 0.0075 0.64 11.4 0.3 3 23 514 534 513 534 0.97

11 15 5.4e-06 0.00046 21.3 0.5 1 23 542 564 542 564 0.98

12 15 0.0051 0.44 11.9 0.2 3 23 572 592 570 592 0.97

13 15 0.00016 0.014 16.6 0.3 1 23 598 620 598 621 0.95

14 15 0.047 4 8.9 1.5 1 23 635 657 635 657 0.96

15 15 0.00082 0.07 14.4 0.1 1 20 959 978 959 981 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2e-05	0.0017	19.5	1.2	1	23	135	157	135	157	0.97
2	15	0.0091	0.78	11.1	5.9	1	23	163	185	163	185	0.96
3	15	0.00013	0.011	16.9	0.1	1	23	289	311	289	311	0.98
4	15	0.0047	0.41	12.0	0.1	1	23	317	340	317	340	0.97
5	15	0.00018	0.015	16.5	3.4	1	23	364	386	364	386	0.97
6	15	0.003	0.25	12.7	0.0	1	23	399	421	399	421	0.95
7	15	0.99	85	4.7	0.2	1	23	427	450	427	450	0.95
8	15	0.016	1.4	10.3	6.2	1	23	457	479	457	479	0.94
9	15	5e-05	0.0043	18.3	4.4	1	23	485	507	485	507	0.97
10	15	0.0075	0.64	11.4	0.3	3	23	514	534	513	534	0.97
11	15	5.4e-06	0.00046	21.3	0.5	1	23	542	564	542	564	0.98
12	15	0.0051	0.44	11.9	0.2	3	23	572	592	570	592	0.97
13	15	0.00016	0.014	16.6	0.3	1	23	598	620	598	621	0.95
14	15	0.047	4	8.9	1.5	1	23	635	657	635	657	0.96
15	15	0.00082	0.07	14.4	0.1	1	20	959	978	959	981	0.93

Sequence Information

Coding Sequence: ATGGAGGAGGGCTTTGCGTTAGACTGGGGCGACTCCGTCGTCCAAGAGGAAGAAGTCATATGCGGCATCGAAAACGAGGGCATGCTAGCATCGGACGGCCCCGAATTCACAGACGTTTGCGACGAAGTCATCGTTAATGAGACCGAGCAGGTCGAAAATGTCTCCGAGGAGAACGTCATGTATCTCACCGATAATAATATCCTCGTTATGCAGCAGAGTAACGAAACACCTTTTATGGACTGCCAGGTATCGGAAGAGGTTGTAACGGATCAATGGAATGATGCCTGTCCCGAGGTTATAGTGGGGAACGAAGAAAATGTCGGGGAGGGTGATAACATCCCCGGTGAAGACGTTACAATTCCTTTACCCTTAGACCAAGACCAGTACACTGCGGCAAGACCATATCCATGCGATTTCTGCAGCAGACGGTTCCGTAAAAAAGCAAACTTAATGAATCACATGGTCTCGCATCAAACCGACCGTCCCCACTGCTGCAACCTCTGCGGGGTACGCTACGTCCGCAAGTGCGATCTAATGAACCATCTAAAGATTCACGCCTACGTCCCCGAAACTGTGGACAACGTAGAGGAGGAGACTCCGGACGATTCGGACTACGAGAAGCACAAGAGGCAGAAACCGTTCATCAAGAAACGGAAGAAGCCAAAGATAAAGGAGGAATTCCCGGATTCCCCCGACGGAAAGGGGGCCTCCAGCTCCAGGAGTTACGATTACGTCGACGAAGATATGAGGCTGATGGAGTCCATGGATGGTAATAATGTCAAGGGGGATTATAACGCTTACCTCCCCCAGGAAAATCATCCCATTACGGAACCACGTTATCCAATTACTGATCCTAGGAAGCCGTTTGTCTGTCAGCACTGTGGAGTTGGTTTTGCAAGGGAAAAAGCATTAGCTTCCCATGCTAGAGTTCATGCAGgCGATAGTCCGTTTGAGTGTCAAAAGTGTGGAGAGATGTTTTGGGACGCTGCCTTAATGCGAGAGCACATAAGAAATAAGCACGGAGACATCGAGGATGCCTTTGAGGATGACGATGATGAGTATTCGGAGGAGGAGGGGAAGTACGGCGAATTTTTCTGTCAGACCTGCGGCGTCTCTTTTCATCGGCTGGAGTTGCTCCGTCGCCACCAGAAGATGCACGTGAAGGAGGAGTACGTCAACGAGGTCGAGTACGGTCACATCTGCAAGATCTGCGGCGAATCCTTCCCGGAGGCTCTCGATCTGCTTGCCCATGCTGAAGTCCACGCACGAGGCTCCGATTATAGATGTATGCTGTGCGGAGAGCTCTGCGCCGACGAGCAGTCTGTTGCGGTGCACGTCCAGTCGAAGCACGGCAAGAACCTCCCCCCGCATACCTGCATGCAATGCGGCCGCACCTGTAAAGATAAAAAGTCCTTATTCAAGCACTCTTTGGAACACAGCAAGGAGAAGGTCTTCAACTGCAATAAGTGCCCGAAGACGTTCCACAACAGGGCTAGACTAAAGCGACATATGTTATCTCATAGGAATAAGGTCGTGGCATGCGACGTATGCGGCGAGGAGTTTCCCGATGGCCGCTCCCTCATGAATCACCGGCACAGTCACAGCTCCGTCTCCGGACGACAATTCCCCTGCAAGGAATGCGGTAAGACCTTCGGTTCGCGCAGCTCACAGCAAATCCATCTAAGAATCCATACCGGAGAGCGACCCTACGGCTGTCGATTCTGCTGGAAAGCGTTTGCCGACGGAGGTACCCTCCGTAAACATGAACGCATTCACACTGGCGAGAAACCGTACGCGTGCGCGGTATGTCCGCGGGCCTTCAACCAACGGGTGGTGCTGCGCGAACACATCCGCTCGCACCATTCGGGCCCTGATCCGAACTACTCGCACTCGGTGACGCCGTACTGCTGTTCGGTCTGTTCGGACATGTTTGCGACGTCGCAGGATCTTATCGTCCATCTGATACACCACTGTGACCTGAATACGGCGATGAGACGGCAGCCGCAGGTGGGCCCCAGGAAGTACAAGCGGAGGCGGAAGCTGAAGCCGCACGAGCTCGACCTCATCTCGAATATCGACGAGGACGAGAGAGACGACGATTTCTCCGATACGGACGACGAGGAGAACGAGAGACGGAAGAGAAAAAAGAAGGCCCCAAGGTCGCCCCCGAAGCAACAGCCCGTCCCGTCGGGCTTTGCCGACGTTGTCGATAGTTTCTCCTCGGCGATAGAGAATATCGGGTCTATCGTCAAGGGTACCGGAAAGAACAAGAAGAAGGTAAAATCGGAACAGTCGGTTCCGTCGCGGCCCAAGATGATTCACACGCAGAAGACTAAGGTTGCGGTCGAAACGACGGAGGGCGGCAAGGTGCGTCACAAAACCAAGACCCTTATCACAAGGACGCAACCGACCGAGCTGAAGTCGGCTACGGGGGAACGGATTAGGCCGCGGACGAAGAACGTCAGTTACCACATCTTGAACCCCGACAAGTACCCGCTGGCAACGTTTAGCGACGACGCAGCTCAAGCCGTTAACAATCTTCTCGCTAGCGAGCCGCACAACGACCATAACGGTCTCGGGGCGGAAAATGTCGAGGAAATTATTCCGGAAAGTGTTCCTCAAATGTCGACGAGACAATTGCGGAGGCAGAATAATAGCTTGGAGCCTGGCAGGTTGATCATAGGGCCCGGAACAAAAGTTGTGAGAATTGTTAAAAGCGGAATGATTGTCTCAAAGTCGAAACAGAAGGACGAGACGGAGCCGGAACAGATAACGCCGGACGTCGAGGAGCCCATAAATATAAAACAGGAGGTCCAGGATACGACGCCTCTGCACGAACTTGCCGAACTTTCGATGCAGCACGCGCAGAGCATATTTCGGTGCGAGATGTGCAGCGAGGTGTTCACGGATAGAGCGCAGCTGCTAGTGCACGTGCCCATACATATTTGA
Protein Sequence: MEEGFALDWGDSVVQEEEVICGIENEGMLASDGPEFTDVCDEVIVNETEQVENVSEENVMYLTDNNILVMQQSNETPFMDCQVSEEVVTDQWNDACPEVIVGNEENVGEGDNIPGEDVTIPLPLDQDQYTAARPYPCDFCSRRFRKKANLMNHMVSHQTDRPHCCNLCGVRYVRKCDLMNHLKIHAYVPETVDNVEEETPDDSDYEKHKRQKPFIKKRKKPKIKEEFPDSPDGKGASSSRSYDYVDEDMRLMESMDGNNVKGDYNAYLPQENHPITEPRYPITDPRKPFVCQHCGVGFAREKALASHARVHAGDSPFECQKCGEMFWDAALMREHIRNKHGDIEDAFEDDDDEYSEEEGKYGEFFCQTCGVSFHRLELLRRHQKMHVKEEYVNEVEYGHICKICGESFPEALDLLAHAEVHARGSDYRCMLCGELCADEQSVAVHVQSKHGKNLPPHTCMQCGRTCKDKKSLFKHSLEHSKEKVFNCNKCPKTFHNRARLKRHMLSHRNKVVACDVCGEEFPDGRSLMNHRHSHSSVSGRQFPCKECGKTFGSRSSQQIHLRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPNYSHSVTPYCCSVCSDMFATSQDLIVHLIHHCDLNTAMRRQPQVGPRKYKRRRKLKPHELDLISNIDEDERDDDFSDTDDEENERRKRKKKAPRSPPKQQPVPSGFADVVDSFSSAIENIGSIVKGTGKNKKKVKSEQSVPSRPKMIHTQKTKVAVETTEGGKVRHKTKTLITRTQPTELKSATGERIRPRTKNVSYHILNPDKYPLATFSDDAAQAVNNLLASEPHNDHNGLGAENVEEIIPESVPQMSTRQLRRQNNSLEPGRLIIGPGTKVVRIVKSGMIVSKSKQKDETEPEQITPDVEEPINIKQEVQDTTPLHELAELSMQHAQSIFRCEMCSEVFTDRAQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01098684; iTF_01097807; iTF_00138365; iTF_00981466;
90% Identity: iTF_00138365; iTF_00981466;
80% Identity: -