Basic Information

Insect: Aphodius granarius
Gene Symbol: -
Assembly: GCA_963971325.1
Location: OZ020223.1:31213576-31221021[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 2.7 2.3e+02 3.3 0.2 1 19 268 286 268 288 0.92

2 20 8.7 7.4e+02 1.8 0.1 5 20 350 365 348 367 0.93

3 20 0.19 17 7.0 3.0 1 19 373 391 373 396 0.91

4 20 1.8e-05 0.0015 19.7 1.0 2 23 462 483 461 483 0.97

5 20 3.3e-06 0.00029 22.0 2.0 2 23 499 520 499 520 0.97

6 20 0.02 1.7 10.1 0.1 2 23 528 550 527 550 0.95

7 20 0.0013 0.11 13.8 0.2 2 23 555 576 555 576 0.96

8 20 0.002 0.17 13.2 0.0 1 23 598 620 598 620 0.97

9 20 0.039 3.4 9.1 3.6 1 23 637 659 637 660 0.95

10 20 0.0035 0.3 12.4 1.0 1 23 670 692 670 692 0.98

11 20 2e-06 0.00018 22.6 7.2 1 23 721 743 721 743 0.99

12 20 0.82 71 5.0 2.6 3 23 763 783 761 783 0.97

13 20 0.011 0.91 10.9 1.7 1 23 805 827 805 827 0.97

14 20 0.025 2.2 9.7 1.1 2 23 840 862 839 862 0.96

15 20 0.00021 0.018 16.3 1.1 1 23 882 904 882 904 0.94

16 20 0.0039 0.33 12.3 1.8 1 23 929 952 929 952 0.93

17 20 0.00031 0.026 15.8 0.3 2 23 963 984 963 984 0.97

18 20 0.0009 0.077 14.3 2.6 1 23 991 1014 991 1014 0.94

19 20 0.00029 0.025 15.8 2.6 1 23 1022 1044 1022 1044 0.99

20 20 0.0018 0.15 13.4 0.4 2 23 1064 1086 1063 1086 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	2.7	2.3e+02	3.3	0.2	1	19	268	286	268	288	0.92
2	20	8.7	7.4e+02	1.8	0.1	5	20	350	365	348	367	0.93
3	20	0.19	17	7.0	3.0	1	19	373	391	373	396	0.91
4	20	1.8e-05	0.0015	19.7	1.0	2	23	462	483	461	483	0.97
5	20	3.3e-06	0.00029	22.0	2.0	2	23	499	520	499	520	0.97
6	20	0.02	1.7	10.1	0.1	2	23	528	550	527	550	0.95
7	20	0.0013	0.11	13.8	0.2	2	23	555	576	555	576	0.96
8	20	0.002	0.17	13.2	0.0	1	23	598	620	598	620	0.97
9	20	0.039	3.4	9.1	3.6	1	23	637	659	637	660	0.95
10	20	0.0035	0.3	12.4	1.0	1	23	670	692	670	692	0.98
11	20	2e-06	0.00018	22.6	7.2	1	23	721	743	721	743	0.99
12	20	0.82	71	5.0	2.6	3	23	763	783	761	783	0.97
13	20	0.011	0.91	10.9	1.7	1	23	805	827	805	827	0.97
14	20	0.025	2.2	9.7	1.1	2	23	840	862	839	862	0.96
15	20	0.00021	0.018	16.3	1.1	1	23	882	904	882	904	0.94
16	20	0.0039	0.33	12.3	1.8	1	23	929	952	929	952	0.93
17	20	0.00031	0.026	15.8	0.3	2	23	963	984	963	984	0.97
18	20	0.0009	0.077	14.3	2.6	1	23	991	1014	991	1014	0.94
19	20	0.00029	0.025	15.8	2.6	1	23	1022	1044	1022	1044	0.99
20	20	0.0018	0.15	13.4	0.4	2	23	1064	1086	1063	1086	0.96

Sequence Information

Coding Sequence: ATGGCTGAGGAGACATTTGGAAATTACAGCTCTTGCTGTCGACTGTGCTTATCGGACCAGTTCAACACATTGAAACCCATATTTGAAGACGCAAACGATACGACGCTGGTACAGAGGATCTTAACGTTCGTAGGCGTGGAGGTGACTTCTAATGACAAACTATCAACACTCATCTGTGACCAATGCCAGAATAGACTCGATGGGTGGGACACCTTCAAGAAGGAATGTTCGAAGAATCAAACCAAACTGCAAACCTGGCTTTCAAGTTGGACAACAAACCATAACATTGCAGACACTAGTATCCAAGTCAAGGATGAACCCGTGGATGCCCCACACGAAACAACAGACGTTCAAGATCAGTTGGTCATCAAGGATGAACCAAACGAAGAGGAAGACTACTACGATGCTCCTATTTTGTCACCGCAGCAGACCCTGGGCGAAGGAAGCAATGGGGCTGAGCTGAATGCAAACAACCACCAAGACGATGGCTCCCAGCATTCCGTCGACTCACGCTTCAGCGCAGCAGGCTCCGCCCCGAGCCTCGACTCCGAAGCGGACTTCTCCGAGAGCGACCTCCAAAAGATCCAGTTCGCCGCTGGCCTCCGCCTAAAATCCAGAACCCTCACCTCCAACCAACCCGTCGACGTACCAATCACAAAAGTCGAAGAGGCATACCTCGAACGCAGCAGGGCTCTCCTAACCATGCTATACACATTCAGATGCGCCTGCCACAACATCCTCTACCCTACGGTTAAAAGATTGTACGGACATCTCCGTGCCACTTACAATTGGTTCCCGATCTTCACCTGTTACAATTGCGTCGTCACTTTTCCAACACGATCGCCTACGATGAGGCACAGCGGGCGGTGCTCCAAACCCTACTTGGAGAATAGTATACGATTGGTTGAGGAGACGAAACGGACTGAGAATAAAGCCCGGTTGTATCAATATTGCAAATGCACACAATGCGAAGCTTTGTTTGCATTTTTCGAGGATTATtgcgatcatatcgataaagatCATATTGATGAGGGGCCGTTTGTTTGCAAATGTTCGAAAGAATTCGGAAAGATCGAGGAATACAAACAACACATGTATTTATCGTGTTATTTGAATTATTACTGCGATATCTGCTATCGGGATTTTGAAACTTTGACGGATTTTAAAAACCATTGCGAAAGCGAACACGACAAAGTCGAGGATTATGTCTTTGTTTCCTACCACGCCGAATTCAAAATTGCGGATACCTCGGAGATTCGGAGCGTCCGAAAGCGGAAAATCGATCAGGTTGAGTCTCCGGAAGACTCCGCACAACCCGAGAAGAAATTCAATCCGGTACGGATAAACCCGGCAGCGAAACCCCCGGTCCTCAAGATGCAGATCACCTGCGAGGTGTGCAAACGCGTCTTCAGCAGCGGTTTCAACCTCAAGAAGCACATGAAGCTCCACAGGGGGAAGAACGACGTACAGAATCGTTGGAAGAACGGTCCGGCGTCGTGCGATAAATGCGGGAAGACCTTCTCGACGTACTACAACATGGTGCGGCACTATAAGACTCACAGCGAGAACGAGCGTCACTTACAATGCGCTTTGTGCGAAGAGAAGTTCCGGTTGGTCTCCGAGCTCAAAGAACACCTGATCTCGACCCACGGCCAAGCCAACGTATGCCAAGAATGCGGGAAGCAATTTGAATCGACCGAGGAACTCGACCAACACAGGAGCGTCCATCTCAACATAAAAGTTTATCGGGATTCAAAGACGGATTCTTACCGTACTGGGTCGAAGAATAGGTACACCTGTGAGCAGTGCGAGGCGGCTTTTGAAAGCGAGGAGGAATTAGGACGACACATGGCTTTGCATCTGGTGAGCGTCGAGACCAACGGTAACGTCGACCAAAAAGACGCTAGGTATTCCTGCGAGGATTGCGAACGCCATTACGTCAGTTACAAAGGATTATGGTTGCATAATAAACGACACCACCCCGAGAGAAAGGTCACCCAACCGGCGTTTAAATGCGAATATTGTAATAGAGTCTTGCAGACAAACGCGGCGTATCAAATGCATAAACAGATGCACGAAAGATTGATCAGACAGGCGAGTGCTTTGCAGGTAAAACAGACGCCTCGGGGGCGTAGGGACGACGAAGAGGACGATGACTATTTCACATGCAAGCATTGCTTCAAGGTGTTCTCGACGAAGTACAATCTCAAGACGCATCTGAAGACGCACGGGATTAACGTATCGCCCGCTAGGGCTTTGAACAAGACTAGTTTGAAGACGTTTTGGTGCGATATCTGCCATCAGGCTTGCCAAGGCTACCAGGAACTCCAGCGACACAAGCAGGAACACGTCAACGAGAATCTCGGAGAGACGGATAGCGTCGAAGACGAAGTCGACGTGAAACCGCAACTCTTCAACTGCGAGATCTGCTCGAAGGTGTTTTTAACACAGCTAGCCTTCACCAGACACAAGAATAAACATTTAAACGAACCGAAGTTGAGGAAgggtaattttgtgtactgcaaaTACTGCAAAGTTCCCTTCTTGAATATGGATTCTCTAAATCACCACATGCTTCGCGAACACAACGAAGTTAATAATCAACGATCGAAATCGAATAATCAAAAGACCGGGGGGAAGAAATACGCTTGTAATTTGTGTAAGAAGACTTTCGATACCTCGGGAGCGTTGTGTTCGCACCAAGGTTGGCATAAGCGTGGGCCTTCCAGTAAACCGTTAAAAATGGAGATAAAAACAGAACCTTCGACAAGTTATAAGGAAATGCACGCTTGTCGTACCTGCGGGTTATGCTTTACGACCGATACCTCCTTACAACTCCATATTTTAGAGGCGCATCGTAATATAAACGCTACGATAATCTCCCCGAGGTGTAACATCTGTAATATGGAGTTTAGTACTGCGGAAGCTTACGAgacccatcagaaattgcatcGGGAGAACACGGCGGCGTTTAAGTGTAAATATTGCCCAAAGACGTTTGCGAAATGCGAATCGGTCAATATGCATATCACTCAGGTTCATCCGCAATACAACGAAGGTAGATACAAGTGTCACCAGTGTAATAGGCTTTTCGAGAAGCAGAATGCTCTGACGATACATCTGAAGGTTCACGATAGGCAGAAGATGACGGGGGTCGTGCCGAAAGAGATGAAACCCAAGAGGATGATCTCGTGTTCGATTTGCCACGCGAGCTTCGAGATTGCCAAAGATTTGCGGAACCATATAATTACAAAGCATCCGTTCTAA
Protein Sequence: MAEETFGNYSSCCRLCLSDQFNTLKPIFEDANDTTLVQRILTFVGVEVTSNDKLSTLICDQCQNRLDGWDTFKKECSKNQTKLQTWLSSWTTNHNIADTSIQVKDEPVDAPHETTDVQDQLVIKDEPNEEEDYYDAPILSPQQTLGEGSNGAELNANNHQDDGSQHSVDSRFSAAGSAPSLDSEADFSESDLQKIQFAAGLRLKSRTLTSNQPVDVPITKVEEAYLERSRALLTMLYTFRCACHNILYPTVKRLYGHLRATYNWFPIFTCYNCVVTFPTRSPTMRHSGRCSKPYLENSIRLVEETKRTENKARLYQYCKCTQCEALFAFFEDYCDHIDKDHIDEGPFVCKCSKEFGKIEEYKQHMYLSCYLNYYCDICYRDFETLTDFKNHCESEHDKVEDYVFVSYHAEFKIADTSEIRSVRKRKIDQVESPEDSAQPEKKFNPVRINPAAKPPVLKMQITCEVCKRVFSSGFNLKKHMKLHRGKNDVQNRWKNGPASCDKCGKTFSTYYNMVRHYKTHSENERHLQCALCEEKFRLVSELKEHLISTHGQANVCQECGKQFESTEELDQHRSVHLNIKVYRDSKTDSYRTGSKNRYTCEQCEAAFESEEELGRHMALHLVSVETNGNVDQKDARYSCEDCERHYVSYKGLWLHNKRHHPERKVTQPAFKCEYCNRVLQTNAAYQMHKQMHERLIRQASALQVKQTPRGRRDDEEDDDYFTCKHCFKVFSTKYNLKTHLKTHGINVSPARALNKTSLKTFWCDICHQACQGYQELQRHKQEHVNENLGETDSVEDEVDVKPQLFNCEICSKVFLTQLAFTRHKNKHLNEPKLRKGNFVYCKYCKVPFLNMDSLNHHMLREHNEVNNQRSKSNNQKTGGKKYACNLCKKTFDTSGALCSHQGWHKRGPSSKPLKMEIKTEPSTSYKEMHACRTCGLCFTTDTSLQLHILEAHRNINATIISPRCNICNMEFSTAEAYETHQKLHRENTAAFKCKYCPKTFAKCESVNMHITQVHPQYNEGRYKCHQCNRLFEKQNALTIHLKVHDRQKMTGVVPKEMKPKRMISCSICHASFEIAKDLRNHIITKHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00138362;
90% Identity: -
80% Identity: -